For Pastis:
Additional dependencies for new features (diploid inference multiscale optimization, etc):
Most of these dependencies can be installed at once using conda:
http://conda.pydata.org/miniconda.html <http://conda.pydata.org/miniconda.html>
_
Once conda is installed, just type the following::
conda install numpy scipy scikit-learn pandas
Or, to include the new features::
conda install numpy scipy scikit-learn pandas autograd
iced
can be installed via::
pip install iced
This package uses distutils, which is the default way of installing python modules.
To install in your home directory, use::
python setup.py install --user
or using pip::
pip install --user pastis
To install for all users on Unix/Linux::
python setup.py build
sudo python setup.py install
or using pip::
pip install pastis
This will install a python package pastis
, and five programs:
pastis-mds
, pastis-nmds
, pastis-pm1
, pastis-pm2
, and
pastis-poisson
. Calling any of those five programs will display the help.