I spent several weeks trying to figure out why I was having errors in my attempts to run pm1 and pm2 on a HiC dataset. It turns out that I neglected to remove the diagonal entries.
I think it would be helpful to make the code only calculate distances from non-diagonal bins.
I spent several weeks trying to figure out why I was having errors in my attempts to run pm1 and pm2 on a HiC dataset. It turns out that I neglected to remove the diagonal entries.
I think it would be helpful to make the code only calculate distances from non-diagonal bins.