Errored out with exit

[b2jia]

Hi! We're trying our best to work with Pastis to generate some beautiful chromosome renderings, but in installation we are being "errored" out, more specifically:

Warning: Assuming default configuration (pastis/utils/{setup_utils,setup}.py was not found)Warning: Assuming default configuration (pastis/optimization/{setup_optimization,setup}.py was not found)Warning: Assuming default configuration (pastis/externals/iced/utils/{setup_utils,setup}.py was not found)Warning: Assuming default configuration (pastis/externals/iced/normalization/{setup_normalization,setup}.py was not found)Warning: Assuming default configuration (pastis/datasets/{setup_datasets,setup}.py was not found)error: Command "gcc -pthread -B /home/blair/anaconda3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I../src/cblas -I/home/blair/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/home/blair/anaconda3/lib/python3.7/site-packages/numpy/core/include -I/home/blair/anaconda3/include/python3.7m -c pastis/externals/iced/io/fastio_.c -o build/temp.linux-x86_64-3.7/pastis/externals/iced/io/fastio_.o -MMD -MF build/temp.linux-x86_64-3.7/pastis/externals/iced/io/fastio_.o.d" failed with exit status 127

[NelleV]

Hi,

as discussed by email, pastis doesn't do any visualization.

In terms of installing pastis, can you let me know how you tried to install it? (pip or python setup.py install) as well as the version of numpy you are using?

Thanks, N

[b2jia]

Hi Nelle,

I tried both (pip install --user pastis) (python setup.py install --user), but ran into the same error that I reported on GitHub. I've tried installing pastis in both Python 2.7 and Python 3.7, but run into the same issue. Thanks for your help Nelle!

[image: image.png]

[image: image.png]

-Blair

On Tue, Feb 18, 2020 at 7:04 AM Nelle Varoquaux notifications@github.com wrote:

Hi,

as discussed by email, pastis doesn't do any visualization.

In terms of installing pastis, can you let me know how you tried to install it? (pip or python setup.py install) as well as the version of numpy you are using?

Thanks, N

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