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hms-dbmi
/
chromoscope
Interactive multiscale visualization for structural variation in human genomes
https://chromoscope.bio/
MIT License
64
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6
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Use `responsiveSize`
#46
sehilyi
closed
1 year ago
0
chore: vcf example support
#45
sehilyi
closed
2 years ago
0
feat: support url parameters to select examples; revert back doga examples
#44
sehilyi
closed
2 years ago
0
https://sehilyi.github.io/gosling-app-sv/?demo=a
#43
sehilyi
closed
2 years ago
0
[WIP] feat: support mutation waterfall plot
#42
sehilyi
closed
2 years ago
0
Documentation
#41
sehilyi
closed
1 year ago
0
Highlight biallelic drivers with `⊙` in front of the driver label
#40
sehilyi
closed
2 years ago
0
feat: upgrade gosling.js; show hover effects; show tooltips for putative drivers
#39
sehilyi
closed
2 years ago
0
feat: highlight selected SV more clearly; correctly show putative drivers
#38
sehilyi
closed
2 years ago
0
feat: clean up and add demos
#37
sehilyi
closed
2 years ago
0
Enable seeing very small segments?
#36
sehilyi
closed
2 years ago
2
Gene annotation not working?
#35
sehilyi
closed
2 years ago
1
feat: upgrade gosling.js
#34
sehilyi
closed
2 years ago
1
chore: working on automating screenshot generation
#33
sehilyi
closed
2 years ago
1
feat: upgrade gosling.js; infer SV using native transforms
#32
sehilyi
closed
2 years ago
0
feat: add filter for sample by ID
#31
sehilyi
closed
2 years ago
0
feat: navigate linear by clicking on a sv
#30
sehilyi
closed
2 years ago
0
feat: add driver positions
#29
sehilyi
closed
2 years ago
0
chore: working on new datasets
#28
sehilyi
closed
2 years ago
0
feat: show orientation on clippings; adjust LOH calculation
#27
sehilyi
closed
2 years ago
0
feat: show read orientation and support gene search on hg38
#26
sehilyi
closed
2 years ago
0
feat: upgrade gosling.js; change link style and sv color scheme
#25
sehilyi
closed
2 years ago
0
Use correct assembly of ideogram
#24
sehilyi
closed
2 years ago
3
feat: show total CN instead of major
#23
sehilyi
closed
2 years ago
0
feat: add CNV track; tooltip shows MAPQ; scroll to top button
#22
sehilyi
closed
2 years ago
0
feat: move navigation and export buttons to the main panel
#21
sehilyi
closed
2 years ago
0
Bring interactive buttons to the main page
#20
sehilyi
closed
2 years ago
0
feat: upgrade gosling; show small svs; no brush hiccup; remove strokes and texts for smoother zoom
#19
sehilyi
closed
2 years ago
0
fix: correct gain calculation; show short links as well; vertical dotted rules
#18
sehilyi
closed
2 years ago
0
feat: add a padding around breakpoints in the linear view
#17
sehilyi
closed
2 years ago
0
feat: add an error boundary
#16
sehilyi
closed
2 years ago
0
feat: upgrade gosling.js
#15
sehilyi
closed
2 years ago
0
feat: change mode trigger interactions to click inside/outside
#14
sehilyi
closed
2 years ago
0
Change mode switch to click inside and outside
#13
sehilyi
closed
2 years ago
0
feat: support interaction/static mode; add a background pattern to scrollable area
#12
sehilyi
closed
2 years ago
0
[critical] Often, the website crashes
#11
sehilyi
closed
2 years ago
1
For the gird-based circular overview, use images instead of interactive gosling components for the performance
#10
sehilyi
closed
2 years ago
0
Double-check if the gain and loss are correctly calculated
#9
sehilyi
closed
2 years ago
1
Proper visual cue when loading alignment data
#8
sehilyi
closed
2 years ago
0
Axis tick labels disappear when clicking on a SV
#7
sehilyi
closed
2 years ago
0
Save PNG does not seem to work on Safari
#6
sehilyi
closed
2 years ago
0
Issue with split reads when inferring SVs
#5
sehilyi
closed
2 years ago
2
zoomTo seams to be a bit off in later chromosomes
#4
sehilyi
closed
2 years ago
0
feat: reorganize UIs; highlight potential SVs; add all corresponding bam files
#3
sehilyi
closed
2 years ago
0
Change gene tracks' titles to `hg19 | Genes`
#2
sehilyi
closed
3 years ago
0
Show between-breakpoint view on the bottom?
#1
sehilyi
closed
2 years ago
0
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