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hms-dbmi
/
chromoscope
Interactive multiscale visualization for structural variation in human genomes
https://chromoscope.bio/
MIT License
60
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6
forks
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feat: add Python package
#96
manzt
closed
1 year ago
0
feat: use new tool name `Chromoscope` and domain (`chromoscope.bio`)
#95
sehilyi
closed
1 year ago
1
docs: update data-config.md
#94
sehilyi
closed
1 year ago
2
Hierarchical clustering of PCAWG samples
#93
dmaziec
closed
1 year ago
2
Add `CONTRIBUTING.md`
#92
sehilyi
closed
1 year ago
0
Remove padding around chromosomes when a chromosome is selected
#91
sehilyi
closed
1 year ago
0
Documentation for presigned URLs.
#90
vstevensf
closed
1 year ago
1
Driver file formats
#89
dominikglodzikhms
closed
1 year ago
1
Updates regarding the bi-allelic mutation status of drivers
#88
sehilyi
closed
1 year ago
2
Adding more color legends and using distinct colors
#87
dominikglodzikhms
opened
1 year ago
2
Upon clicking of a driver gene name in the circular view, jump linear view to the regions of the gene
#86
DominikGlodzik
opened
1 year ago
0
Want to remove `undefined` on tooltips & addressing overlaps between drivers
#85
vstevensf
opened
1 year ago
3
Show sequencing reads from the .bam file around a mutation
#84
DominikGlodzik
opened
1 year ago
0
Sometimes Chr2 does not work when zoomed in
#83
sehilyi
opened
1 year ago
0
Show sequence tracks w/o coverage and alignment when missing bam files
#82
sehilyi
closed
1 year ago
1
Get idea from IGV Google Cloud
#81
sehilyi
opened
1 year ago
0
Mutation display
#80
dominikglodzikhms
opened
1 year ago
3
Gene search not responding
#79
dominikglodzikhms
closed
1 year ago
1
Visual representation of strand at SV breakpoints
#78
dominikglodzikhms
closed
1 year ago
1
Clarify the use of `chr` prefix in documentation
#77
sehilyi
opened
1 year ago
2
LOH is different between linear and circular
#76
sehilyi
opened
1 year ago
1
doc: add sidebar and multiple pages
#75
sehilyi
closed
1 year ago
0
Zoom to chr2 does not show mutations at the very end of chr2
#74
sehilyi
opened
1 year ago
0
More y-axis margin for mutations in the linear view
#73
dominikglodzikhms
closed
1 year ago
1
Make brushes visible when showing a tiny region
#72
sehilyi
opened
1 year ago
0
Still error with indel tracks
#71
sehilyi
closed
1 year ago
1
File for Driver in the config
#70
sehilyi
closed
1 year ago
1
Tracks sometimes unsynchronized
#69
sehilyi
closed
1 year ago
1
feat: support external URLs with their own params
#68
sehilyi
closed
1 year ago
0
Support FHD and do not require scrolling
#67
sehilyi
closed
1 year ago
0
One mutation
#66
sehilyi
closed
1 year ago
0
SV type w/o strands --> "other" and grey colors
#65
sehilyi
opened
2 years ago
0
Support faster rendering of SV
#64
sehilyi
opened
2 years ago
3
feat: save thumbnails to indexedDB
#63
sehilyi
closed
2 years ago
0
Add margin to Mutation
#62
sehilyi
closed
2 years ago
0
Does not jump sometimes ?
#61
sehilyi
closed
2 years ago
0
Load thumbnail images on the fly
#60
sehilyi
closed
2 years ago
1
Duplicated CNV segments sometimes
#59
sehilyi
opened
2 years ago
0
feat: experimental encoding for arcs
#58
sehilyi
closed
2 years ago
0
Encoding for linear view (`flipY` and `y`)
#57
sehilyi
closed
2 years ago
1
Support custom tracks (e.g., bigwig, bed)
#56
sehilyi
opened
2 years ago
0
Jump to next break point for translocation
#55
sehilyi
closed
2 years ago
0
Click on a SV on a circular, and zoom behavior
#54
sehilyi
closed
2 years ago
0
local data
#53
sehilyi
closed
2 years ago
0
chrosmome positions in the url
#52
sehilyi
closed
2 years ago
0
Note field in the JSON spec for external
#51
sehilyi
closed
2 years ago
0
WebGL: Lost Context (Web Crash issues)
#50
sehilyi
opened
2 years ago
4
Adding padding on the top of the CNV
#49
sehilyi
closed
2 years ago
0
Point mutation disappear when there is only one
#48
sehilyi
closed
2 years ago
0
Support loading a sample via URL (no sample overview panel)
#47
sehilyi
closed
2 years ago
1
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