Update the well deprecator to input per-well comments in the input file

[seanderickson]

• currently the deprecation utility file input format is a text file containing only well id's, one per line
• the deprecation activity comment for all wells is entered as a command line argument
• update to use a file format that can take the well id, comment
• also update the deprecator to be able to key off of the well barcode

see: https://github.com/hmsiccbl/screensaver/blob/00a09f55d302242a06721ce0af74e4597ff1b0ad/batch/src/main/java/edu/harvard/med/screensaver/io/libraries/WellDeprecator.java#L132

@dwrobel1 @JAS60