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hmsiccbl / screensaver1

Screensaver Version 1 - End of life on December 1, 2018
GNU General Public License v2.0
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ERROR web.context.ContextLoader:220 - Context initialization failed #169

Closed jgrundstad closed 8 years ago

jgrundstad commented 8 years ago

I'm attempting to deploy a fresh installation and running into these errors in the tomcat logs. Please let me know if there is any other info I can offer. Thanks!

2015-12-17 18:09:01,314  INFO web.context.ContextLoader:187 - Root WebApplicationContext: initialization started
2015-12-17 18:09:01,371  INFO context.support.XmlWebApplicationContext:456 - Refreshing Root WebApplicationContext: startup date [Thu Dec 17 18:09:01 CST 2015]; root of context hierarchy
2015-12-17 18:09:01,409  INFO factory.xml.XmlBeanDefinitionReader:315 - Loading XML bean definitions from URL [file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/classes/spring-context-web-default.xml]
2015-12-17 18:09:01,469  INFO factory.xml.XmlBeanDefinitionReader:315 - Loading XML bean definitions from class path resource [spring-context-persistence.xml]
2015-12-17 18:09:01,510  INFO factory.xml.XmlBeanDefinitionReader:315 - Loading XML bean definitions from class path resource [spring-context-services.xml]
2015-12-17 18:09:01,523  INFO factory.xml.XmlBeanDefinitionReader:315 - Loading XML bean definitions from class path resource [spring-context-ui.xml]
2015-12-17 18:09:01,688  INFO factory.xml.XmlBeanDefinitionReader:315 - Loading XML bean definitions from class path resource [spring-context-authentication.xml]
2015-12-17 18:09:02,149  INFO factory.support.DefaultListableBeanFactory:555 - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@62b21d14: defining beans [screensaverProperties,scopedTarget.currentScreensaverUser,currentScreensaverUser,scopedTarget.entityViewPolicy,entityViewPolicy,scopedTarget.entityEditPolicy,entityEditPolicy,smallMoleculeCherryPickRequestAllowancePolicy,rnaiCherryPickRequestAllowancePolicy,cherryPickPlateSourceWellMinimumVolumePolicy,urlEncrypter,structureImageProvider,studyImageProvider,imageProviderServlet,plateFacilityIdInitializer,screensaverDataSource,entityViewPolicyInjector,entityManagerFactory,org.springframework.aop.config.internalAutoProxyCreator,org.springframework.transaction.annotation.AnnotationTransactionAttributeSource#0,org.springframework.transaction.interceptor.TransactionInterceptor#0,org.springframework.transaction.config.internalTransactionAdvisor,transactionManager,org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor#0,genericEntityDao,usersDao,librariesDao,screenDao,screenResultsDao,cherryPickRequestDao,cellsDao,schemaUtil,screenDerivedPropertiesUpdater,libraryScreeningDerivedPropertiesUpdater,screenResultParser,screenResultLoader,screenResultDeleter,mockScreenResultParser,studyAnnotationParser,publicationInfoProvider,reagentVendorIdentiferListParser,libraryCreator,libraryContentsLoader,libraryContentsVersionManager,cherryPickRequestAllocator,cherryPickRequestPlateMapper,cherryPickRequestPlateMapFilesBuilder,cherryPickRequestCherryPicksAdder,sdfWellsDataExporter,screeningDuplicator,cellHts2Annotator,userAgreementUpdater,emailService,screenResultReporter,serviceMessages,screenDataSharingLevelUpdater,plateUpdater,screenGenerator,wellCopyVolumeAdjuster,cellParser,experimentalCellInformationParser,userActivityLoggerAspectBean,uiCommandExceptionHandlerAspectBean,uiCommandPointcut,org.springframework.aop.aspectj.AspectJPointcutAdvisor#0,org.springframework.aop.aspectj.AspectJPointcutAdvisor#1,scopedTarget.messages,messages,uiBean,appInfo,scopedTarget.exceptionReporter,exceptionReporter,scopedTarget.menu,menu,scopedTarget.helpViewer,helpViewer,attachedFiles,entityComments,scopedTarget.userChecklistItems,userChecklistItems,scopedTarget.reagentFinder,reagentFinder,scopedTarget.wellFinder,wellFinder,scopedTarget.libraryCopyPlateFinder,libraryCopyPlateFinder,scopedTarget.librariesBrowser,librariesBrowser,libraryCopyPlateSearchResultNested,libraryCopyPlateCommentSearchResultNested,scopedTarget.libraryViewer,libraryViewer,scopedTarget.libraryContentsVersionRef,libraryContentsVersionRef,scopedTarget.wellsSdfDataExporterForUi,wellsSdfDataExporterForUi,scopedTarget.wellsBrowser,wellsBrowser,wellSearchResultsNested,scopedTarget.wellCopyVolumesBrowser,wellCopyVolumesBrowser,scopedTarget.wellVolumesBrowser,wellVolumesBrowser,scopedTarget.wellViewer,wellViewer,scopedTarget.libraryContentsImporter,libraryContentsImporter,scopedTarget.libraryCopiesBrowser,libraryCopiesBrowser,scopedTarget.copyFreezeThawReportSearchResults,copyFreezeThawReportSearchResults,scopedTarget.copyMinimumVolumeReportSearchResults,copyMinimumVolumeReportSearchResults,scopedTarget.libraryCopyViewer,libraryCopyViewer,scopedTarget.libraryCopyDetail,libraryCopyDetail,scopedTarget.studiesBrowser,studiesBrowser,scopedTarget.studyViewer,studyViewer,scopedTarget.studyDetailViewer,studyDetailViewer,scopedTarget.screensBrowser,screensBrowser,scopedTarget.screenViewer,screenViewer,scopedTarget.entityUpdateHistoryBrowser,entityUpdateHistoryBrowser,scopedTarget.screenDetailViewer,screenDetailViewer,scopedTarget.screenResultViewer,screenResultViewer,scopedTarget.plateReaderRawDataTransformer,plateReaderRawDataTransformer,scopedTarget.cherryPickReaderRawDataTransformer,cherryPickReaderRawDataTransformer,screenResultImporter,scopedTarget.libraryPlatesBrowser,libraryPlatesBrowser,scopedTarget.libraryCopyPlatesBrowser,libraryCopyPlatesBrowser,scopedTarget.libraryCopyPlateBatchEditor,libraryCopyPlateBatchEditor,scopedTarget.cherryPickRequestsBrowser,cherryPickRequestsBrowser,scopedTarget.cherryPickRequestViewer,cherryPickRequestViewer,scopedTarget.labCherryPicksBrowser,labCherryPicksBrowser,scopedTarget.cherryPickRequestDetailViewer,cherryPickRequestDetailViewer,scopedTarget.screenFinder,screenFinder,scopedTarget.cherryPickRequestFinder,cherryPickRequestFinder,scopedTarget.screenerFinder,screenerFinder,scopedTarget.heatMapViewer,heatMapViewer,scopedTarget.cellHTS2Runner,cellHTS2Runner,cellHTS2ReportAuthorizationFilter,scopedTarget.staffBrowser,staffBrowser,scopedTarget.screenersBrowser,screenersBrowser,scopedTarget.userViewer,userViewer,scopedTarget.smUserAgreementUpdaterUi,smUserAgreementUpdaterUi,scopedTarget.rnaiUserAgreementUpdaterUi,rnaiUserAgreementUpdaterUi,scopedTarget.activitiesBrowser,activitiesBrowser,scopedTarget.activityViewer,activityViewer,scopedTarget.libraryDetailViewer,libraryDetailViewer,annotationsBrowser,scopedTarget.annotationViewer,annotationViewer,scopedTarget.attachedFilesBrowser,attachedFilesBrowser,scopedTarget.cellsBrowser,cellsBrowser,scopedTarget.cellViewer,cellViewer,scopedTarget.screenCellsBrowser,screenCellsBrowser,scopedTarget.screenCellViewer,screenCellViewer,operatorConverter,projectPhaseConverter,screenTypeConverter,plateSizeConverter,solventConverter,copyUsageTypeConverter,plateTypeConverter,stringConverter,toLowerCaseConverter,dateConverter,currencyConverter,listConverter,setConverter,molecularMassConverter,molarConcentrationValueConverter,mgMlConcentrationConverter,plateDilutionFactorConverter,silencingReagentTypeConverter,screenStatusConverter,screeningRoomUserClassificationConverter,affiliationCategoryConverter,normalizePlatesMethodConverter,normalizePlatesScaleConverter,normalizePlatesNegControlsConverter,scoreReplicatesMethodConverter,summarizeReplicatesMethodConverter,libraryScreeningStatusConverter,libraryTypeConverter,cherryPickAssayProtocolsFollowedConverter,cherryPickFollowupResultsStatusConverter,pubmedCentralIdConverter,dateTimeConverter,emptyWellsConverter,screensaverUserConverter,serviceActivityTypeConverter,envInfo,eCommonsAuthenticationClient,screensaverLoginModule,loginModuleFactory]; root of factory hierarchy
2015-12-17 18:09:02,488  INFO med.screensaver.ScreensaverProperties:74 - loading screensaver properties from resource /screensaver.properties
2015-12-17 18:09:02,493  INFO factory.support.DefaultListableBeanFactory:422 - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@62b21d14: defining beans [screensaverProperties,scopedTarget.currentScreensaverUser,currentScreensaverUser,scopedTarget.entityViewPolicy,entityViewPolicy,scopedTarget.entityEditPolicy,entityEditPolicy,smallMoleculeCherryPickRequestAllowancePolicy,rnaiCherryPickRequestAllowancePolicy,cherryPickPlateSourceWellMinimumVolumePolicy,urlEncrypter,structureImageProvider,studyImageProvider,imageProviderServlet,plateFacilityIdInitializer,screensaverDataSource,entityViewPolicyInjector,entityManagerFactory,org.springframework.aop.config.internalAutoProxyCreator,org.springframework.transaction.annotation.AnnotationTransactionAttributeSource#0,org.springframework.transaction.interceptor.TransactionInterceptor#0,org.springframework.transaction.config.internalTransactionAdvisor,transactionManager,org.springframework.orm.jpa.support.PersistenceAnnotationBeanPostProcessor#0,genericEntityDao,usersDao,librariesDao,screenDao,screenResultsDao,cherryPickRequestDao,cellsDao,schemaUtil,screenDerivedPropertiesUpdater,libraryScreeningDerivedPropertiesUpdater,screenResultParser,screenResultLoader,screenResultDeleter,mockScreenResultParser,studyAnnotationParser,publicationInfoProvider,reagentVendorIdentiferListParser,libraryCreator,libraryContentsLoader,libraryContentsVersionManager,cherryPickRequestAllocator,cherryPickRequestPlateMapper,cherryPickRequestPlateMapFilesBuilder,cherryPickRequestCherryPicksAdder,sdfWellsDataExporter,screeningDuplicator,cellHts2Annotator,userAgreementUpdater,emailService,screenResultReporter,serviceMessages,screenDataSharingLevelUpdater,plateUpdater,screenGenerator,wellCopyVolumeAdjuster,cellParser,experimentalCellInformationParser,userActivityLoggerAspectBean,uiCommandExceptionHandlerAspectBean,uiCommandPointcut,org.springframework.aop.aspectj.AspectJPointcutAdvisor#0,org.springframework.aop.aspectj.AspectJPointcutAdvisor#1,scopedTarget.messages,messages,uiBean,appInfo,scopedTarget.exceptionReporter,exceptionReporter,scopedTarget.menu,menu,scopedTarget.helpViewer,helpViewer,attachedFiles,entityComments,scopedTarget.userChecklistItems,userChecklistItems,scopedTarget.reagentFinder,reagentFinder,scopedTarget.wellFinder,wellFinder,scopedTarget.libraryCopyPlateFinder,libraryCopyPlateFinder,scopedTarget.librariesBrowser,librariesBrowser,libraryCopyPlateSearchResultNested,libraryCopyPlateCommentSearchResultNested,scopedTarget.libraryViewer,libraryViewer,scopedTarget.libraryContentsVersionRef,libraryContentsVersionRef,scopedTarget.wellsSdfDataExporterForUi,wellsSdfDataExporterForUi,scopedTarget.wellsBrowser,wellsBrowser,wellSearchResultsNested,scopedTarget.wellCopyVolumesBrowser,wellCopyVolumesBrowser,scopedTarget.wellVolumesBrowser,wellVolumesBrowser,scopedTarget.wellViewer,wellViewer,scopedTarget.libraryContentsImporter,libraryContentsImporter,scopedTarget.libraryCopiesBrowser,libraryCopiesBrowser,scopedTarget.copyFreezeThawReportSearchResults,copyFreezeThawReportSearchResults,scopedTarget.copyMinimumVolumeReportSearchResults,copyMinimumVolumeReportSearchResults,scopedTarget.libraryCopyViewer,libraryCopyViewer,scopedTarget.libraryCopyDetail,libraryCopyDetail,scopedTarget.studiesBrowser,studiesBrowser,scopedTarget.studyViewer,studyViewer,scopedTarget.studyDetailViewer,studyDetailViewer,scopedTarget.screensBrowser,screensBrowser,scopedTarget.screenViewer,screenViewer,scopedTarget.entityUpdateHistoryBrowser,entityUpdateHistoryBrowser,scopedTarget.screenDetailViewer,screenDetailViewer,scopedTarget.screenResultViewer,screenResultViewer,scopedTarget.plateReaderRawDataTransformer,plateReaderRawDataTransformer,scopedTarget.cherryPickReaderRawDataTransformer,cherryPickReaderRawDataTransformer,screenResultImporter,scopedTarget.libraryPlatesBrowser,libraryPlatesBrowser,scopedTarget.libraryCopyPlatesBrowser,libraryCopyPlatesBrowser,scopedTarget.libraryCopyPlateBatchEditor,libraryCopyPlateBatchEditor,scopedTarget.cherryPickRequestsBrowser,cherryPickRequestsBrowser,scopedTarget.cherryPickRequestViewer,cherryPickRequestViewer,scopedTarget.labCherryPicksBrowser,labCherryPicksBrowser,scopedTarget.cherryPickRequestDetailViewer,cherryPickRequestDetailViewer,scopedTarget.screenFinder,screenFinder,scopedTarget.cherryPickRequestFinder,cherryPickRequestFinder,scopedTarget.screenerFinder,screenerFinder,scopedTarget.heatMapViewer,heatMapViewer,scopedTarget.cellHTS2Runner,cellHTS2Runner,cellHTS2ReportAuthorizationFilter,scopedTarget.staffBrowser,staffBrowser,scopedTarget.screenersBrowser,screenersBrowser,scopedTarget.userViewer,userViewer,scopedTarget.smUserAgreementUpdaterUi,smUserAgreementUpdaterUi,scopedTarget.rnaiUserAgreementUpdaterUi,rnaiUserAgreementUpdaterUi,scopedTarget.activitiesBrowser,activitiesBrowser,scopedTarget.activityViewer,activityViewer,scopedTarget.libraryDetailViewer,libraryDetailViewer,annotationsBrowser,scopedTarget.annotationViewer,annotationViewer,scopedTarget.attachedFilesBrowser,attachedFilesBrowser,scopedTarget.cellsBrowser,cellsBrowser,scopedTarget.cellViewer,cellViewer,scopedTarget.screenCellsBrowser,screenCellsBrowser,scopedTarget.screenCellViewer,screenCellViewer,operatorConverter,projectPhaseConverter,screenTypeConverter,plateSizeConverter,solventConverter,copyUsageTypeConverter,plateTypeConverter,stringConverter,toLowerCaseConverter,dateConverter,currencyConverter,listConverter,setConverter,molecularMassConverter,molarConcentrationValueConverter,mgMlConcentrationConverter,plateDilutionFactorConverter,silencingReagentTypeConverter,screenStatusConverter,screeningRoomUserClassificationConverter,affiliationCategoryConverter,normalizePlatesMethodConverter,normalizePlatesScaleConverter,normalizePlatesNegControlsConverter,scoreReplicatesMethodConverter,summarizeReplicatesMethodConverter,libraryScreeningStatusConverter,libraryTypeConverter,cherryPickAssayProtocolsFollowedConverter,cherryPickFollowupResultsStatusConverter,pubmedCentralIdConverter,dateTimeConverter,emptyWellsConverter,screensaverUserConverter,serviceActivityTypeConverter,envInfo,eCommonsAuthenticationClient,screensaverLoginModule,loginModuleFactory]; root of factory hierarchy
2015-12-17 18:09:02,499 ERROR web.context.ContextLoader:220 - Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'screensaverProperties' defined in URL [file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/classes/spring-context-web-default.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [edu.harvard.med.screensaver.ScreensaverProperties]: Constructor threw exception; nested exception is java.lang.NullPointerException
    at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:288)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1003)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:907)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485)
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456)
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:291)
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:288)
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:190)
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:580)
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895)
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425)
    at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:276)
    at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:197)
    at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:5077)
    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5591)
    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
    at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1321)
    at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:693)
    at org.apache.catalina.manager.HTMLManagerServlet.doPost(HTMLManagerServlet.java:216)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:650)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
    at org.apache.catalina.filters.CsrfPreventionFilter.doFilter(CsrfPreventionFilter.java:136)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
    at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:108)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:614)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
    at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:956)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
    at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
    at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:625)
    at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
    at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    at java.lang.Thread.run(Thread.java:662)
Caused by: org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [edu.harvard.med.screensaver.ScreensaverProperties]: Constructor threw exception; nested exception is java.lang.NullPointerException
    at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:141)
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:108)
    at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280)
    ... 45 more
Caused by: java.lang.NullPointerException
    at java.util.Properties$LineReader.readLine(Properties.java:418)
    at java.util.Properties.load0(Properties.java:337)
    at java.util.Properties.load(Properties.java:325)
    at edu.harvard.med.screensaver.ScreensaverProperties.initializeProperties(ScreensaverProperties.java:77)
    at edu.harvard.med.screensaver.ScreensaverProperties.<init>(ScreensaverProperties.java:54)
    at edu.harvard.med.screensaver.ScreensaverProperties.<init>(ScreensaverProperties.java:45)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
    at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126)
    ... 47 more
2015-12-17 18:09:02,564  INFO myfaces.config.FacesConfigurator:159 - Reading standard config org/apache/myfaces/resource/standard-faces-config.xml
2015-12-17 18:09:02,578  INFO myfaces.config.FacesConfigurator:379 - Reading config jar:file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/jsf-facelets-1.1.14.jar!/META-INF/faces-config.xml
2015-12-17 18:09:02,586  INFO myfaces.config.FacesConfigurator:379 - Reading config jar:file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-1.1.6.jar!/META-INF/faces-config.xml
2015-12-17 18:09:02,595  INFO myfaces.config.FacesConfigurator:379 - Reading config jar:file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-sandbox-1.1.7.jar!/META-INF/faces-config.xml
2015-12-17 18:09:02,608  INFO myfaces.config.FacesConfigurator:540 - Reading config /WEB-INF/faces-config.xml
2015-12-17 18:09:02,626 ERROR myfaces.config.FacesConfigurator:272 - You are using the MyFaces-package : tomahawk in different versions; first (and probably used) version is : 1.1.6, currently encountered version is : facelets-taglib-0.1. This will cause undesired behaviour. Please clean out your class-path. The first encountered version is loaded from : file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-1.1.6.jar. The currently encountered version is loaded from : jar:file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-facelets-taglib-0.1.jar!/META-INF/MANIFEST.MF
2015-12-17 18:09:02,627  INFO myfaces.config.FacesConfigurator:199 - Starting up MyFaces-package : myfaces-api in version : 1.1.5 from path : file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/myfaces-api-1.1.5.jar
2015-12-17 18:09:02,628  INFO myfaces.config.FacesConfigurator:199 - Starting up MyFaces-package : myfaces-impl in version : 1.1.5 from path : file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/myfaces-impl-1.1.5.jar
2015-12-17 18:09:02,628  INFO myfaces.config.FacesConfigurator:199 - Starting up MyFaces-package : tomahawk-sandbox in version : 1.1.7 from path : file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-sandbox-1.1.7.jar
2015-12-17 18:09:02,629  INFO myfaces.config.FacesConfigurator:199 - Starting up MyFaces-package : tomahawk in version : 1.1.6 from path : file:/opt/apache-tomcat-7.0.67/webapps/screensaver/WEB-INF/lib/tomahawk-1.1.6.jar
2015-12-17 18:09:02,909  INFO renderkit.html.HtmlRenderKitImpl:107 - Overwriting renderer with family = javax.faces.Form rendererType = javax.faces.Form renderer class = org.apache.myfaces.renderkit.html.ext.HtmlFormRenderer
2015-12-17 18:09:02,934  INFO renderkit.html.HtmlRenderKitImpl:107 - Overwriting renderer with family = javax.faces.Command rendererType = org.apache.myfaces.Button renderer class = org.apache.myfaces.renderkit.html.ext.HtmlButtonExRenderer
2015-12-17 18:09:02,946 ERROR myfaces.config.FacesConfigurator:784 - Class edu.harvard.med.screensaver.ui.arch.util.Messages does not implement PhaseListener
2015-12-17 18:09:02,947  INFO myfaces.config.FacesConfigurator:941 - Serialization provider : class org.apache.myfaces.shared_impl.util.serial.DefaultSerialFactory
2015-12-17 18:09:02,951  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//main/main.jsf
2015-12-17 18:09:02,951  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//main/goodbye.jsf
2015-12-17 18:09:02,952  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//main/authenticatedPage.jsf
2015-12-17 18:09:02,952  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//help/helpViewer.jsf
2015-12-17 18:09:02,953  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//dev/env
2015-12-17 18:09:02,953  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//util/entityUpdateHistory
2015-12-17 18:09:02,954  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/wellFinder
2015-12-17 18:09:02,954  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/reagentFinder
2015-12-17 18:09:02,955  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/librariesBrowser
2015-12-17 18:09:02,955  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryViewer
2015-12-17 18:09:02,955  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryDetailViewer
2015-12-17 18:09:02,956  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/wellSearchResults
2015-12-17 18:09:02,956  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/reagentSearchResults
2015-12-17 18:09:02,957  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/wellVolumeSearchResults
2015-12-17 18:09:02,957  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/wellCopyVolumeSearchResults
2015-12-17 18:09:02,957  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/wellViewer
2015-12-17 18:09:02,958  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/admin/libraryContentsImporter
2015-12-17 18:09:02,958  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//studies/studiesBrowser
2015-12-17 18:09:02,958  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//studies/studyViewer
2015-12-17 18:09:02,959  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/screensBrowser
2015-12-17 18:09:02,959  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/screenViewer
2015-12-17 18:09:02,959  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/screenDetailViewer
2015-12-17 18:09:02,960  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/libraryPlatesBrowser
2015-12-17 18:09:02,960  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cherryPickRequests/cherryPickRequestsBrowser
2015-12-17 18:09:02,960  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cherryPickRequests/cherryPickRequestViewer
2015-12-17 18:09:02,961  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cherryPickRequests/cherryPickRequestEditor
2015-12-17 18:09:02,961  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/screenresults/admin/screenPlateReaderRawDataTransformer
2015-12-17 18:09:02,961  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cherryPickRequests/cherryPickRequestRawDataTransformer
2015-12-17 18:09:02,962  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//screens/screenresults/admin/screenResultImporter
2015-12-17 18:09:02,962  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//bii/screens/screenresults/cellHTS2Runner
2015-12-17 18:09:02,962  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//activities/activitiesBrowser
2015-12-17 18:09:02,963  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//activities/activityViewer
2015-12-17 18:09:02,963  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/staffBrowser
2015-12-17 18:09:02,964  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/screenersBrowser
2015-12-17 18:09:02,964  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/associatesBrowser
2015-12-17 18:09:02,964  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/screenAssociatesBrowser
2015-12-17 18:09:02,964  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/labMembersBrowser
2015-12-17 18:09:02,965  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/userViewer
2015-12-17 18:09:02,966  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/admin/smUserAgreementUpdater
2015-12-17 18:09:02,966  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//users/admin/rnaiUserAgreementUpdater
2015-12-17 18:09:02,967  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryCopiesBrowser
2015-12-17 18:09:02,969  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryCopyEditor
2015-12-17 18:09:02,969  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryCopyViewer
2015-12-17 18:09:02,969  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//libraries/libraryCopyPlatesBrowser
2015-12-17 18:09:02,970  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//attachedFiles/attachedFilesBrowser
2015-12-17 18:09:02,970  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cells/cellsBrowser
2015-12-17 18:09:02,970  WARN myfaces.webapp.StartupServletContextListener:80 - File for navigation 'to id' does not exist /opt/apache-tomcat-7.0.67/webapps/screensaver//cells/cellViewer
2015-12-17 18:09:02,975  INFO myfaces.webapp.StartupServletContextListener:99 - ServletContext '/opt/apache-tomcat-7.0.67/webapps/screensaver/' initialized.
seanderickson commented 8 years ago
jgrundstad commented 8 years ago

Hi Sean,

That fixed the problem, my bad (rtfm). Thanks for clearing it up!

Jason