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hoelzer-lab
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hypro
Extend hypothetical prokka protein annotations using additional homology searches against larger databases
GNU General Public License v3.0
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Nextflow
#37
EvaFriederike
closed
2 years ago
1
finalize nf config
#36
hoelzer
closed
3 years ago
0
Update README
#35
hoelzer
opened
3 years ago
2
Add Docker support for nextflow version of the pipeline
#34
hoelzer
opened
3 years ago
15
Nextflow: clean up code
#33
hoelzer
closed
3 years ago
0
Nextflow: summary output
#32
hoelzer
closed
3 years ago
3
Nextflow: mmseqs2 handling
#31
hoelzer
closed
3 years ago
4
Nextflow: prokka fails for files with too long contig names
#30
hoelzer
closed
3 years ago
4
Nextflow
#29
hoelzer
closed
3 years ago
2
Turn into nextflow workflow
#28
phiweger
closed
3 years ago
2
File not found error when executed in directory
#27
hoelzer
closed
3 years ago
2
Path mmseqs2.sh
#26
hoelzer
closed
3 years ago
1
Add the tutorial
#25
marlt
closed
4 years ago
3
Limit thread usage
#24
marlt
closed
4 years ago
2
Write test section for recipe
#23
marlt
closed
4 years ago
0
Mmseqs2
#22
marlt
closed
4 years ago
2
Result DB not updated by mmseqs search
#21
marlt
closed
4 years ago
11
Remove some of the test data
#20
marlt
closed
4 years ago
1
No valid license string in recipe
#19
marlt
closed
4 years ago
3
mmseqs2 filtering
#18
hoelzer
closed
4 years ago
2
Code review
#17
hoelzer
closed
4 years ago
0
conda-build not working
#16
hoelzer
closed
4 years ago
5
GitHub release when we are fine with everything
#15
hoelzer
closed
4 years ago
0
mmseqs2.sh in conda recipe
#14
hoelzer
closed
4 years ago
1
clean up help message
#13
marlt
closed
4 years ago
0
protocol for conda recipe
#12
marlt
closed
4 years ago
2
MMSeqs2 search protein - protein
#11
marlt
closed
4 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'run/prokka/testrun.gbk'
#10
hoelzer
closed
4 years ago
2
prokka gbk format not parsable with biopython SeqIO
#9
marlt
closed
4 years ago
10
Is it possible that the extension just finds another hypothetical protein?
#8
hoelzer
closed
4 years ago
9
Conda recipe
#7
hoelzer
closed
3 years ago
18
additional databases
#6
marlt
closed
4 years ago
8
Provide full and spare mode on hyprot selection
#5
marlt
closed
4 years ago
2
Match scientific names to gene IDs for uniprotkb
#4
marlt
closed
4 years ago
3
mmseq2 database download and indexing
#3
hoelzer
closed
4 years ago
9
uniprotkb could be the default db so that -d becomes an optional parameter
#2
hoelzer
closed
4 years ago
2
mkdir output directory if it is not present
#1
hoelzer
closed
4 years ago
2