issues
search
hoelzer-lab
/
rnaflow
A simple RNA-Seq differential gene expression pipeline using Nextflow
GNU General Public License v3.0
95
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
hista2 error using singularity profile
#238
chrissikath
opened
2 months ago
7
Fastq preprocessing causing hisat2 error
#237
DAWells
closed
6 months ago
5
About the batch effect
#236
zhangwenda0518
closed
8 months ago
3
Dont use characters other than letters, numbers, '_' and '.' in the design
#235
hoelzer
opened
8 months ago
0
Issue with comparisons.csv file
#234
mglgc
closed
8 months ago
4
add pbspro executor
#233
hoelzer
opened
9 months ago
0
singularity problem
#232
mictadlo
opened
9 months ago
13
Add Sus scrofa
#231
hoelzer
closed
9 months ago
0
Adding Sus scrofa to Piano and Webgestalt
#230
hoelzer
opened
9 months ago
1
Piano and WebGestalt
#229
m-jahani
closed
8 months ago
4
Deseq2 error
#228
AnneBoshove
closed
9 months ago
18
ggkegg package
#227
hoelzer
opened
11 months ago
0
WEBGESTALT using KEGG 2019 Database
#226
marlt
opened
1 year ago
0
error in DESeq2 step
#225
m-jahani
opened
1 year ago
3
Fix webgestalt missing organism
#224
fischer-hub
closed
1 year ago
9
Webgestalt: Organism is missing Error
#223
hoelzer
opened
1 year ago
2
Webgestalt error on restricted HPC
#222
hoelzer
closed
1 year ago
1
DESeq2 error handling, increase RAM on HPC
#221
hoelzer
closed
1 year ago
0
correct storage path of .tar.gz sortmerna files
#220
hoelzer
closed
1 year ago
0
ERROR ~ Error executing process > 'download_sortmerna:sortmernaGet'
#219
apkbala107
opened
1 year ago
1
Improved visuals
#218
hoelzer
opened
1 year ago
0
Help running test profile
#217
telatin
opened
1 year ago
4
When i execute the pipeline i am getting -> ERROR ~ Error executing process > 'download_sortmerna:sortmernaGet'
#216
apkbala107
closed
1 year ago
16
Getting error Trying to give AWS S3 Bucket data as the input for this pipeline.
#215
apkbala107
opened
1 year ago
3
~Missing hisat2 index file reports an error~ Improve UX for genome concatenation
#214
weir12
opened
1 year ago
2
Padj Value for Volcano Plot
#213
tensulin
opened
1 year ago
1
ResolvePackageNotFound: isa-l
#212
th-of
closed
1 year ago
6
Rebuild deseq image
#211
tensulin
opened
1 year ago
5
Fix refactor_reportingtools_table.rb crash whenrun with non-ENS feature IDs and feature_type not 'gene'
#210
fischer-hub
closed
1 year ago
3
Fix pca plots and ENS ID lookup for non ENS IDs
#209
fischer-hub
closed
1 year ago
0
Fix deseq2 warnings ( use 'rowNames' instead of 'row.names' )
#208
fischer-hub
closed
1 year ago
0
explicitly enable conda in conda profile
#207
fischer-hub
closed
1 year ago
4
Pipeline not starting on HPC due to nf-tower plugin
#206
fischer-hub
closed
1 year ago
5
Provide alternative mapping tools
#205
hoelzer
opened
1 year ago
0
ReportingTools does not finish the HTML plot
#204
hoelzer
closed
1 year ago
0
PCAs have only one data point
#203
hoelzer
closed
1 year ago
2
Warning use rowNames instead of row.names
#202
hoelzer
closed
1 year ago
0
Running test profile w/ conda or mamba fails
#201
hoelzer
closed
2 years ago
1
update DGE result documentation
#200
fischer-hub
closed
2 years ago
1
directionality of the comparison from Deseq2 output
#199
shalinisingh65
opened
2 years ago
5
possible deseq container error
#198
danchubb
closed
2 years ago
8
featurecounts strandedness issue
#197
danchubb
closed
2 years ago
9
make webgestalt output optional
#196
hoelzer
closed
2 years ago
0
fix typo
#195
fischer-hub
closed
2 years ago
0
push local changes that prevent checkout
#194
hoelzer
closed
2 years ago
1
fix channel order in expression_reference_based sub-wf, closes #191
#193
fischer-hub
closed
2 years ago
0
A question that no 07-DifferentialExpression generated ！
#192
zhangwenda0518
closed
1 year ago
16
Error: expression_reference_based:webgestalt (MAQCA_vs_MAQCB)
#191
hoelzer
closed
2 years ago
1
Process `expression_reference_based:tpm_filter` input file name collision
#190
AGunnell77
closed
2 years ago
18
fix bad character " ' " in gene names crashing deseq2.R , closes #177
#189
fischer-hub
closed
2 years ago
0
Next