hsgweon pipits issues - Githubissues

hsgweon / pipits

Automated pipeline for analyses of fungal ITS from the Illumina

GNU General Public License v3.0

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Updated UNITE to 10.0. SINTAX is the default classifier.

#61 hsgweon closed 3 weeks ago
0
missing pipits_reformatAssignedTaxonomy with --warcup

#60 tefer0 opened 3 months ago
0
Way to use the latest version UNITE

#59 Ks55Mir opened 6 months ago
0
pispino_seqprep

#58 favolaschia opened 7 months ago
0
Error when running RDP classification: Error: None zero returncode: classifier -Xms4g -Xmx16g classify -t pipits_db/UNITE_retrained_27.10.2022/UNITE_retrained/rRNAClassifier.properties -o process_out/assigned_taxonomy_rdp_raw.txt process_out/intermed iate/input_nr_otus_nonchimeras_relabelled.fasta

#57 menglemore opened 8 months ago
5
unable to download UNITE trained database, version: 27.10.2022

#56 JavariaAshraf opened 1 year ago
4
Error can not find pipits_uc2otutable in line 35, in <module>

#55 luongphekidz07 closed 1 year ago
0
[SSL: CERTIFICATE_VERIFY_FAILED]

#54 luongphekidz07 closed 1 year ago
0
Files not merged after pispino_seqprep

#53 bea95dc closed 1 year ago
7
FUNITS -t command is it specific for cpus or threads?

#52 lcamVz closed 1 year ago
2
Is Removing adapters needed?

#51 lcamVz closed 2 years ago
2
Updated UNITE to 8.3

#50 hsgweon closed 2 years ago
0
Ion torrent single ended ITS data analysis with PIPITS

#49 MarwaElnaiem closed 2 years ago
3
ImportError: No module named pipits - Error: None zero returncode

#48 alabba closed 1 year ago
4
is there a way to create a list with sample names with multiple fields?

#47 lcamVz closed 3 years ago
4
Issues accessing classifier.jar within PIPETS PROCESS

#46 rjmseq closed 3 years ago
3
PIPITS PROCESS Error: none zero returncode: biom convert

#45 Sandra-ctrl closed 3 years ago
4
Readme update

#44 FabWei closed 3 years ago
0
Not able to import phylotype table using phyloseq

#43 kunstner closed 3 years ago
3
ERROR: You have 0 sequences identified as ITS1. Are you sure your sequences are ITS1?

#42 gxenomics101 closed 3 years ago
2
How to analyze ITS from Ion PGM reads?

#41 Kur1sutaru closed 4 years ago
2
Error: None zero returncode after Re-inflating sequences

#40 lcamVz closed 4 years ago
14
Empty read pair list

#39 lcamVz closed 4 years ago
4
New UNITE db update. PIPITS_FUNITS directory rm fixed.

#38 hsgweon closed 4 years ago
0
Delay in downloading UCHIME database during the pipits_process run

#37 gcha31 closed 4 years ago
0
error in phylotyping with pipits 2.4

#36 FabWei closed 4 years ago
4
error non zero returncode re-inflating sequences.

#35 peernils closed 4 years ago
2
Pipits json2hdf5

#34 hsgweon closed 5 years ago
0
Error: None zero returncode - biom.exception.TableException: Unsupported matrix data type.

#33 ckeuschn closed 5 years ago
5
Pipits process: UCHIME database MD5 checksum

#32 EmiliaHannula closed 5 years ago
4
Issue with Pipits_ process

#31 Biomassuark closed 5 years ago
3
Pipits downloading multicpus

#30 hsgweon closed 5 years ago
0
update pipits via conda doesn't work properly

#29 DrCBG closed 5 years ago
0
Question on runtime of pipits_funits step

#28 davidkim8 closed 5 years ago
6
pipits_prep parses file names badly

#27 Roli-Wilhelm closed 5 years ago
5
Update installation instructions

#26 grayfall closed 5 years ago
1
Error: None zero returncode: conda list

#25 grayfall closed 5 years ago
1
pipits_funits "you have 0 sequences" error

#24 srosten closed 5 years ago
5
Clustering at > 97%

#23 jcaguayo closed 5 years ago
1
Probable NumPy issue with pipits_process

#22 pamelarussell closed 5 years ago
6
"You Have 0 Sequences" Error When Running pipits_funits

#21 brycealex closed 5 years ago
8
Error while running pipits_process: "Error: None zero returncode: biom convert ..."

#20 molecules closed 4 years ago
29
Locating the uchime Reference Dataset

#19 brycealex closed 6 years ago
2
Stucked in the stage 'PIPITS_PROCESS'

#18 DH1983 closed 5 years ago
33
pipits_funits

#17 igo111 closed 5 years ago
10
problem with pipits_funits

#16 JuuKa closed 5 years ago
6
Issue rereplicating

#15 wzacs1 closed 6 years ago
2
Retrain UNITE fungal data.

#14 davidvilanova closed 6 years ago
1
major problem with pispino_seqprep and VSEARCH

#13 DelmoPy closed 5 years ago
1
problem with pipits_funits (ITSx)

#12 alisqq closed 5 years ago
3