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ht-diva
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pqtl_pipeline_finemap
Fine mapping analysis within the pQTL pipeline project
MIT License
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Single SNP loci
#24
dariushghasemi
opened
1 week ago
1
Evaluating COJO results via Next-Flow pipeline
#23
dariushghasemi
opened
1 week ago
0
Collecting credible sets (COJO outputs) never ends with whole seqid
#22
dariushghasemi
closed
1 week ago
1
EAF in COJO results is discordant from EAF in GWAS
#21
dariushghasemi
closed
1 week ago
0
NLRP12 region
#20
dariushghasemi
closed
1 week ago
2
Conditional analysis (cojo-cond) returning NA for part of the SNPs
#19
dariushghasemi
opened
3 weeks ago
0
Locus breaker bis can output multiple loci and thus can not be used as it is to redefine region
#18
SoCadiou
closed
2 weeks ago
1
Locus redefinition option does not work.
#17
dariushghasemi
closed
2 weeks ago
1
Error in PNG plot
#16
dariushghasemi
closed
1 month ago
1
Multi-allelic variants are filtered in COJO analysis.
#15
dariushghasemi
opened
1 month ago
0
Locus breaker in fine-mapping
#14
dariushghasemi
opened
1 month ago
1
Pval threshold
#13
SoCadiou
opened
1 month ago
0
SuSiE fine-mapping
#12
dariushghasemi
opened
1 month ago
1
Create Conda environment
#11
dariushghasemi
opened
1 month ago
0
Conditional plot
#10
dariushghasemi
opened
2 months ago
1
clean up the locus breaker script
#9
clagiamba
opened
2 months ago
0
S04 path to be fixed
#8
gmauro
opened
2 months ago
0
output in the run_cojo rule
#7
gmauro
opened
2 months ago
0
merge feature branch into the main branch
#6
gmauro
closed
2 months ago
1
README usage section
#5
gmauro
opened
2 months ago
0
update container version
#4
gmauro
opened
3 months ago
0
add gcta and plink2 to the docker image
#3
gmauro
closed
3 months ago
0
fix Cojo loop over loci
#2
gmauro
closed
3 months ago
0
Dockerization, adding common stuff, updating Snakefile, reformatting
#1
gmauro
closed
4 months ago
0