huangyh09 brie issues - Githubissues

huangyh09 / brie

BRIE: Bayesian Regression for Isoform Estimate in Single Cells

https://brie.readthedocs.io

Apache License 2.0

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brie-count smartseq3 bam

#64 lishuangshuang0616 opened 5 days ago
1
Is BRIE2 appliable in 10x Genomics scRNA data

#63 cynthier closed 5 months ago
4
UnicodeDecodeError

#62 igonzals closed 7 months ago
1
Error when running brie-count: IndexError: list index out of range

#61 fweberling opened 7 months ago
1
split cells into groups and run brie2

#60 caochch opened 1 year ago
3
ELBO_gain and effect size

#59 seongguheo closed 1 year ago
1
How to get the specific sites where differential splicing events occurs

#58 TuoCai2000 opened 1 year ago
0
MXE chromosomecoordinates to gene_ids

#57 TdzBAS opened 1 year ago
0
p values outputfile

#56 TdzBAS opened 1 year ago
0
confused about Psi_95CI

#55 QuanlongJiang opened 1 year ago
1
Brie-count error with paired end smart-seq2 data

#54 Stephen1202-Wang opened 1 year ago
1
some questions about psi distribution

#53 TuoCai2000 opened 1 year ago
0
Brie-count Multiprocessing using only 1 core

#52 nilcam closed 1 year ago
2
multiple 10x samples integration to run brie-count

#51 TuoCai2000 opened 1 year ago
1
visualize sashimi plot with brie2

#50 TuoCai2000 opened 1 year ago
3
brie-quant uses all available resources

#49 supermaxiste closed 1 year ago
1
the errors about the brie-count

#48 liuyu988 opened 2 years ago
2
the output of brie-count don't contain the .h5ad file

#47 liuyu988 opened 2 years ago
3
the output of brie-count has not .h5ad file

#46 liuyu988 closed 2 years ago
1
Other AS types counting, no output

#45 zhaoshuoxp opened 2 years ago
6
Brie-Count and Brie-Quant Errors

#44 ri2gu opened 2 years ago
7
pull for v2.2.0

#43 huangyh09 closed 2 years ago
0
Brie-quant input

#42 gabee-chan opened 2 years ago
2
2.x.x

#41 huangyh09 closed 2 years ago
0
`brie-count` fails with `KeyError '1'`

#40 cartal closed 2 years ago
1
Mode 1 and gene features

#39 Lavieenrose123 opened 2 years ago
6
UnboundLocalError: local variable 'adata' referenced before assignment

#38 hyjforesight opened 2 years ago
1
get the PSI for every alternative splicing event in every cell

#37 Laura-1997 opened 3 years ago
1
update 2.x.x development branch

#36 huangyh09 closed 3 years ago
0
Modeling cell-level technical variation

#35 gmstanle closed 3 years ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte

#34 Byronxy closed 3 years ago
4
2.x.x minor updates

#33 huangyh09 closed 4 years ago
0
Update setup.py

#32 Byronxy closed 4 years ago
1
change to BRIE v2

#31 huangyh09 closed 4 years ago
0
Export count matrix containing isoforms

#30 grimwoo closed 3 years ago
1
0.2.x

#29 huangyh09 closed 4 years ago
0
Analytics

#28 huangyh09 closed 4 years ago
0
0.2.x

#27 huangyh09 closed 4 years ago
0
add checkings in the readme file

#26 huangyh09 closed 5 years ago
0
Error in map_data function

#25 cmarti closed 5 years ago
2
version 0.2.2

#24 huangyh09 closed 5 years ago
0
Merge pull request #22 from huangyh09/master

#23 huangyh09 closed 5 years ago
0
Fix issue with deps when installing.

#22 neevor closed 5 years ago
0
splicing events annotations

#21 jphe opened 5 years ago
0
filter out low coverage event

#20 jphe opened 5 years ago
1
Comparing groups of single cells

#19 ghost opened 5 years ago
4
How to generate feature files using Ensembl annotation file?

#18 gangcai closed 5 years ago
3
What's the difference between mouse_features.filtered.csv.gz and mouse_features.lenient.csv.gz, and which one to use?

#17 gangcai closed 5 years ago
3
Invalid divide value in brie_MH_Heuristic

#16 trevortknguyen opened 6 years ago
0
'nan' output in weights.tsv

#15 JustRoomTemp closed 6 years ago
0