issues
search
huangyh09
/
brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
https://brie.readthedocs.io
Apache License 2.0
41
stars
15
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Freeze during h5ad converting
#65
shiquan
closed
1 month ago
2
brie-count smartseq3 bam
#64
lishuangshuang0616
opened
2 months ago
1
Is BRIE2 appliable in 10x Genomics scRNA data
#63
cynthier
closed
7 months ago
4
UnicodeDecodeError
#62
igonzals
closed
9 months ago
1
Error when running brie-count: IndexError: list index out of range
#61
fweberling
opened
10 months ago
1
split cells into groups and run brie2
#60
caochch
opened
1 year ago
3
ELBO_gain and effect size
#59
seongguheo
closed
1 year ago
1
How to get the specific sites where differential splicing events occurs
#58
TuoCai2000
opened
1 year ago
0
MXE chromosomecoordinates to gene_ids
#57
TdzBAS
opened
1 year ago
0
p values outputfile
#56
TdzBAS
opened
1 year ago
0
confused about Psi_95CI
#55
QuanlongJiang
opened
1 year ago
1
Brie-count error with paired end smart-seq2 data
#54
Stephen1202-Wang
opened
1 year ago
1
some questions about psi distribution
#53
TuoCai2000
opened
1 year ago
0
Brie-count Multiprocessing using only 1 core
#52
nilcam
closed
1 year ago
2
multiple 10x samples integration to run brie-count
#51
TuoCai2000
opened
1 year ago
1
visualize sashimi plot with brie2
#50
TuoCai2000
opened
2 years ago
3
brie-quant uses all available resources
#49
supermaxiste
closed
2 years ago
1
the errors about the brie-count
#48
liuyu988
opened
2 years ago
2
the output of brie-count don't contain the .h5ad file
#47
liuyu988
opened
2 years ago
3
the output of brie-count has not .h5ad file
#46
liuyu988
closed
2 years ago
1
Other AS types counting, no output
#45
zhaoshuoxp
opened
2 years ago
6
Brie-Count and Brie-Quant Errors
#44
ri2gu
opened
2 years ago
7
pull for v2.2.0
#43
huangyh09
closed
2 years ago
0
Brie-quant input
#42
gabee-chan
opened
2 years ago
2
2.x.x
#41
huangyh09
closed
2 years ago
0
`brie-count` fails with `KeyError '1'`
#40
cartal
closed
2 years ago
1
Mode 1 and gene features
#39
Lavieenrose123
opened
2 years ago
6
UnboundLocalError: local variable 'adata' referenced before assignment
#38
hyjforesight
opened
2 years ago
1
get the PSI for every alternative splicing event in every cell
#37
Laura-1997
opened
3 years ago
1
update 2.x.x development branch
#36
huangyh09
closed
3 years ago
0
Modeling cell-level technical variation
#35
gmstanle
closed
4 years ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#34
Byronxy
closed
4 years ago
4
2.x.x minor updates
#33
huangyh09
closed
4 years ago
0
Update setup.py
#32
Byronxy
closed
4 years ago
1
change to BRIE v2
#31
huangyh09
closed
4 years ago
0
Export count matrix containing isoforms
#30
grimwoo
closed
4 years ago
1
0.2.x
#29
huangyh09
closed
5 years ago
0
Analytics
#28
huangyh09
closed
5 years ago
0
0.2.x
#27
huangyh09
closed
5 years ago
0
add checkings in the readme file
#26
huangyh09
closed
5 years ago
0
Error in map_data function
#25
cmarti
closed
5 years ago
2
version 0.2.2
#24
huangyh09
closed
5 years ago
0
Merge pull request #22 from huangyh09/master
#23
huangyh09
closed
5 years ago
0
Fix issue with deps when installing.
#22
neevor
closed
5 years ago
0
splicing events annotations
#21
jphe
opened
5 years ago
0
filter out low coverage event
#20
jphe
opened
5 years ago
1
Comparing groups of single cells
#19
ghost
opened
6 years ago
4
How to generate feature files using Ensembl annotation file?
#18
gangcai
closed
6 years ago
3
What's the difference between mouse_features.filtered.csv.gz and mouse_features.lenient.csv.gz, and which one to use?
#17
gangcai
closed
5 years ago
3
Invalid divide value in brie_MH_Heuristic
#16
trevortknguyen
opened
6 years ago
0
Next