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hubmapconsortium
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py-hubmapbags
Python package used to build the submission for the CFDE Search Portal
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Add updated C2M2_datapackage.json file
#57
j-uranic
closed
1 week ago
0
Update file.py
#56
j-uranic
closed
1 week ago
0
Update file.py
#55
j-uranic
closed
2 weeks ago
0
Observed issued on Bridges2
#54
icaoberg
opened
1 month ago
0
Juranic/dbgap fields report
#53
j-uranic
closed
1 week ago
0
Check if DOI URL
#52
icaoberg
opened
1 month ago
0
WIP - Tagging of unpublished datasets
#51
icaoberg
opened
1 month ago
0
Support tags/tagging
#50
icaoberg
opened
1 month ago
0
Optimize reports daily
#49
icaoberg
closed
1 month ago
0
Fixed issues associated with 303 status
#48
icaoberg
closed
3 months ago
0
API get assay type method returns status 303
#47
icaoberg
closed
1 month ago
2
Update file.py
#46
j-uranic
closed
4 months ago
0
Addresses some issues brought in ticket #41
#45
icaoberg
closed
7 months ago
2
Issues with missing IDs in subject file
#44
icaoberg
opened
8 months ago
0
Add description
#43
icaoberg
opened
9 months ago
0
Issue with dataset description on HBM749.MMKH.463
#42
icaoberg
closed
4 months ago
4
Import Issues
#41
jpuerto-psc
closed
7 months ago
2
Using py-hubmap-inventory to file information
#40
icaoberg
closed
9 months ago
0
Update anatomy.py
#39
icaoberg
closed
1 year ago
0
Create `analysis_type.py`
#38
icaoberg
closed
1 year ago
0
Create `analysis_type.py`
#37
icaoberg
closed
1 year ago
0
Update method to accept 'Publication' as a dataset type
#36
icaoberg
closed
1 year ago
0
Turn `example8.py` into DAG
#35
icaoberg
opened
1 year ago
1
Backups file
#34
icaoberg
closed
1 month ago
1
Update method to save plot to disk as PNG
#33
icaoberg
opened
1 year ago
1
Remove duplicates from daily report
#32
icaoberg
closed
1 year ago
0
Basic plots
#31
icaoberg
closed
1 year ago
1
Optimize `reports.daily()`
#30
icaoberg
closed
1 month ago
1
Added feature for improved usability
#29
icaoberg
closed
1 year ago
0
Big merge
#28
icaoberg
closed
1 year ago
0
detabify; fix indentation of a block
#27
jswelling
closed
1 year ago
0
Latest changes
#26
icaoberg
closed
1 year ago
1
Update function that gets UBERON codes from organ.yaml
#25
icaoberg
opened
2 years ago
0
Add analysis_type column to file.tsv
#24
icaoberg
closed
1 year ago
1
Add subject_substance.tsv
#23
icaoberg
closed
1 year ago
1
Add biosample_gene.tsv
#22
icaoberg
closed
1 year ago
1
Add collection_gene.tsv
#21
icaoberg
closed
1 year ago
1
Add phenotype_gene.tsv
#20
icaoberg
closed
1 year ago
1
Welling/expanded organ codes
#2
jswelling
closed
2 years ago
0
Create a method that uses the input of this function
#1
icaoberg
opened
2 years ago
0
Convert shell scripts to Python
#13
icaoberg
closed
1 year ago
1
Query and generate UUIDs
#14
icaoberg
opened
2 years ago
1
Save results of pickle file into local db, e.g. use SQLite
#15
icaoberg
opened
2 years ago
1
Skip computation if assay type is not found
#19
icaoberg
closed
9 months ago
1
Enable logging
#18
icaoberg
opened
2 years ago
0
Use entities-api to get info directly from database
#17
icaoberg
closed
1 year ago
2
Fix in code reference to cfde_registry_dcc:HuBMAP
#9
icaoberg
closed
9 months ago
1
Assay type not being mapped to biosample.tsv
#8
icaoberg
opened
2 years ago
0
Add sex. age_at_enrollment, ethnicity to subject.tsv
#7
icaoberg
closed
1 year ago
2
Add disease information
#6
icaoberg
closed
1 year ago
2
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