hubmapconsortium sprm issues

hubmapconsortium / sprm

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test 3D CODEX processing once preprocessing module is finished

#23 rfmurphy opened 10 months ago
0
Update SPRM documentation

#22 tCeZ opened 10 months ago
0
SPRM v1.3 Release

#21 tCeZ opened 10 months ago
0
Cell type label handling

#20 mruffalo opened 11 months ago
1
Marking data products in pipeline manifest

#19 SFD5311 opened 11 months ago
0
Embed new `ome-tiff-normalize` submodule

#18 mruffalo closed 1 year ago
1
Include NMF decomposition in addition to PCA

#17 mruffalo opened 1 year ago
0
Investigate CellDIVE tSNE embedding

#16 mruffalo closed 2 years ago
0
Implement 3D SPRM

#15 mruffalo opened 2 years ago
0
"true" -> true in manifest.json

#14 jswelling closed 2 years ago
1
cell center output file header

#13 jingchunzhu opened 2 years ago
0
Uniform use of `nuclei` and `nucleus`

#12 ilan-gold opened 3 years ago
0
Cell ID mismatch in polygon list

#11 mruffalo closed 3 years ago
8
Failure in BLAS memory allocation

#10 mruffalo closed 3 years ago
4
SPRM excessive memory allocation on large stitched images

#9 jswelling closed 3 years ago
1
Mismatch between cell indices in segmentation mask and SPRM output

#8 mruffalo closed 3 years ago
1
Use AnnData instead of CSV Files

#7 ilan-gold opened 3 years ago
1
Standalone version of SPRM

#6 mruffalo closed 3 years ago
0
Add a LICENSE file

#5 ngehlenborg closed 3 years ago
0
Inaccurate Cell Outlines

#4 tCeZ closed 4 years ago
0
Make pipeline

#3 mruffalo closed 4 years ago
0
Use time.monotonic instead of time.time

#2 mruffalo closed 4 years ago
0
Tweak file reading: use pathlib.Path in listing and sorting images

#1 mruffalo closed 4 years ago
0