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huishenlab
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biscuit
BISulfite-seq CUI Toolkit
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Deal with UMIs
#57
seynard
closed
1 month ago
3
Loading reference genome takes a lot of time
#56
demis001
opened
2 months ago
1
[Question] Is it possible to set different trimming parameters for read 1 and read 2?
#55
JiantaoShi
closed
3 months ago
1
bugfix for adding CpY filter
#54
njspix
closed
4 months ago
1
add cpy count filter
#53
njspix
closed
4 months ago
0
Installation problem
#52
KseniaJuravel
closed
3 months ago
3
[Issue] "SNP BED (test_snp.bed.gz) is empty" when run biscuit epiread
#51
fei0810
closed
6 months ago
1
[Issue] Incorrect calling of NM
#50
njspix
closed
8 months ago
1
[Issue] Issue with bgzipped bed file
#49
njspix
closed
8 months ago
1
`biscuit pileup` by multiple regions
#48
bounlu
closed
8 months ago
2
SNP calling from Nanopore sequencing of bisulfite treated DNA
#47
weishwu
closed
8 months ago
2
fix keep tmp files option
#46
kew24
closed
11 months ago
0
Run biscuit epiread with customized snp BED files
#45
JiantaoShi
closed
11 months ago
4
`BISCUIT` output
#44
bounlu
closed
12 months ago
2
compatiblity with SNPsplit or whatshap
#43
xixueyu96
closed
11 months ago
2
Extract SNPs in VCF format
#42
bounlu
closed
11 months ago
3
[Issue] No header when bsconv is not provided an output file
#41
njspix
closed
1 year ago
1
Methylation-aware structural variant calling
#40
bounlu
opened
1 year ago
2
[Issue] Remove requirement for snp .bed when running epiread
#39
njspix
opened
1 year ago
0
Issues with samblaster when using BISCUIT
#38
KChadwick78
closed
1 year ago
3
MD tag generation incorrect?
#37
semenko
closed
1 year ago
4
STRAND information in vcf2bed
#36
nash5202
closed
1 year ago
1
BAM file as the input
#35
bounlu
closed
1 year ago
5
Set LC_ALL=C globally
#34
semenko
closed
1 year ago
1
Remove GNU parallel dependency
#33
semenko
closed
1 year ago
8
[Issue] Biscuit QC doesn't run / parallel error
#32
semenko
closed
1 year ago
4
Fix breaking bug in QC.sh
#31
semenko
closed
1 year ago
0
[Issue] Pileup errors
#30
njspix
opened
2 years ago
0
Replace GNU parallel with tee
#29
njspix
closed
1 year ago
4
epiread.c
#28
vpbrendel
closed
2 years ago
2
Trimming reads & comparison to bwa-meth / bismark?
#27
semenko
closed
2 years ago
1
bug in statistical reporting
#26
vpbrendel
closed
2 years ago
1
Wrong accounting of methylation calls in estimated overlaps
#25
vpbrendel
closed
2 years ago
1
ASM precision of p-values for Fisher's exact test limited by use of float flag (p-values smaller than 6 decimal places are displayed as 0.000000)
#24
b-kolar
closed
2 years ago
1
Mismatch between `vcf2bed` and `epiread`
#23
ekushele
closed
1 year ago
1
[Issue] trivial code correction for pileup.c
#22
vpbrendel
closed
2 years ago
2
[Issue] FILL IN TITLE
#21
vpbrendel
closed
2 years ago
3
[Issue] Alignment Issue
#20
JunxiFeng
closed
2 years ago
8
Segmentation fault when using biscuit align with -p option for interleaved input fastq file
#19
TrueScience
closed
2 years ago
21
[Issue] Biscuit align failed
#18
brainfo
closed
2 years ago
1
Allow gzipped input for SNP BED
#17
njspix
closed
2 years ago
1
[Issue] Pileup errors when using somatic mode
#16
njspix
closed
2 years ago
3
Conversion Rate calculation
#15
Irfanwustl
closed
3 years ago
2
Issues with the QC script
#14
SSunkara
closed
3 years ago
1
[Issue] QC.sh with precompiled binary
#13
r-mashoodh
closed
3 years ago
10
NOMEseq epiread output
#12
xxxmichixxx
closed
2 years ago
1
Error [M::bwa_idx_load_from_disk] read 0 ALT contigs
#11
hariiyer16
closed
3 years ago
1
[Issue] Is there a recommend trimming tool?
#10
ifishlin
closed
3 years ago
1
[Issue] asm results interpretation and how to deal with across different samples
#9
utcao
closed
3 years ago
2
weird rectangle output
#8
weishwu
closed
3 years ago
4
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