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humburg
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pirates
Improving the quality of deep sequencing data
MIT License
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Convert id length to int
#32
humburg
closed
7 years ago
3
Better info-level logging
#31
humburg
closed
7 years ago
1
Track number of short/long reads and clusters
#30
humburg
closed
7 years ago
3
Improved progress logging
#29
humburg
closed
7 years ago
1
Unit tests are too slow
#28
humburg
opened
7 years ago
0
Sequence diffs
#27
humburg
closed
7 years ago
2
Performance improvements
#26
humburg
closed
7 years ago
1
Add pypy support
#25
humburg
closed
7 years ago
1
Filter candidate UIDs prior to merging
#24
humburg
closed
7 years ago
1
Approximate matching of UIDs
#23
humburg
closed
7 years ago
1
Merge small clusters
#22
humburg
closed
7 years ago
11
Create class to wrap sequence and quality data
#21
humburg
closed
7 years ago
11
Tolerate errors in UIDs during initial consensus calling
#20
humburg
closed
7 years ago
0
Unit tests
#19
humburg
closed
7 years ago
2
Packaging
#18
humburg
closed
7 years ago
0
Create user guide
#17
humburg
opened
7 years ago
0
Name for python package
#16
humburg
opened
7 years ago
3
Guidelines for contributions.
#15
humburg
closed
7 years ago
0
Provide guidance for contributers
#14
humburg
closed
7 years ago
0
Add documentation
#13
humburg
opened
7 years ago
0
Beware of consensus sequences with many underlying differences
#12
humburg
opened
7 years ago
1
Use 1-based index for sequence diffs
#11
humburg
closed
7 years ago
0
Sort diff by position
#10
humburg
closed
7 years ago
1
Use quality scores when computing difference between sequences
#9
humburg
opened
7 years ago
0
Merge singletons into larger clusters
#8
humburg
closed
7 years ago
2
Support python 2 and 3
#7
humburg
opened
7 years ago
2
Unit tests and code coverage integration
#6
humburg
closed
7 years ago
0
Set-up continuous integration
#5
humburg
closed
7 years ago
0
Ensure read names in output file are compatible with downstream tools
#4
humburg
closed
7 years ago
0
Use binary sequence encoding
#3
humburg
opened
7 years ago
0
Create command-line interface
#2
humburg
closed
7 years ago
0
Create python package
#1
humburg
closed
7 years ago
1