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humengying0907 / InstaPrism

InstaPrism is an R package for fast implementation of BayesPrism
GNU General Public License v3.0
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Would be package update cell state estimates? #1

Open colinisstudent opened 1 year ago

colinisstudent commented 1 year ago

I noticed that the updated estimates of cell type compositions would be largely different from the initial cell type compositions. However, would the package also provide updated estimates of cell state composition ?

Thanks!

humengying0907 commented 1 year ago

In current version (InstaPrism v0.1.4), the InstaPrism_update() function enables reference updates for user-defined cell-types. For cell-types being updated, InstaPrism_update() only returns cell type abundance estimates; for cell-types not being updated, by setting keep.phi = 'phi.cs', users will get theta at cell state levels.