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huyustats / SCATS

A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
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installing errors #2

Open lucky-Mendel opened 5 years ago

lucky-Mendel commented 5 years ago

Hi, I tried to use SCATS, but I failed to install it. Can you give me some suggestions? Here is my command: cython -a ./likelihoodumi.pyx errors: Traceback (most recent call last): File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/bin/cython", line 8, in main(command_line = 1) File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 711, in main result = compile(sources, options) File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 686, in compile return compile_multiple(source, options) File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 664, in compile_multiple result = run_pipeline(source, options, context=context) File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 491, in run_pipeline pipeline = Pipeline.create_pyx_pipeline(context, options, result) File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Pipeline.py", line 250, in create_pyx_pipeline create_pipeline(context, mode, exclude_classes=exclude_classes), File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Pipeline.py", line 157, in create_pipeline from .Optimize import FlattenInListTransform, SwitchTransform, IterationTransform File "/hwfssz1/ST_PRECISION/PUB/softwares/Anaconda2-4.3.0/lib/python2.7/site-packages/Cython/Compiler/Optimize.py", line 1868, in class InlineDefNodeCalls(Visitor.NodeRefCleanupMixin, Visitor.EnvTransform): AttributeError: 'module' object has no attribute 'NodeRefCleanupMixin'