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huyustats / SCATS

A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
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Single Cell Analysis of Transcript Splicing (SCATS)

A statistical tool to detect differential alternative splicing events using single-cell RNA-seq

Computational pipeline of SCATS

System Requirements

For optimal performance, we recommend a HPC with 20+ cores

Inputs of SCATS

The input of SCATS is single-cell RNA-seq read data in BAM format together with a refrence isoform annotation file.

Installation

Please refer to Installation for how to install SCATS.

Usage

Please refere to Usage for how to use SCATS.

Contact

If you have any questions/issues/bugs, please post them on GitHub. They would also be helpful to other users.