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hwlim / BisKit-RNA

BisKit for CCHMC HPC users
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featureCount option #12

Closed cahn20 closed 5 months ago

cahn20 commented 5 months ago

Added feature count as an option in the config.yml file.

Feature counts functionality was already up and running as part of the pipeline, so there should be results already available in the Testrun directory.

This has been successfully tested.

hwlim commented 5 months ago

@cahn20 I don't think we need to list up featurecount files for all RNA species since they will eventually summed up to all feature count. Just list the final one only.

cahn20 commented 5 months ago

Thanks for the tip; I simplified the featureCounts block in the Snakefile.