search

i10labtitech / GINGER

GNU General Public License v3.0
24 stars 2 forks source link

Low quality annotations #5

Open s-kyungyong opened 10 months ago

s-kyungyong commented 10 months ago

Hello!

I noticed that the final output from GINGER includes such annotations as:

>mRNA_6
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

>mRNA_88442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For all the cases I have check so far, the issue was AUGUSTUS. I will probably need to re-run training and prediction for AUGUSTUS. But I wondered why GINGER decided to keep these annotations when no other evidence supports for the predicted structures....

grep 'mRNA_88442' ginger_phase2.gff
ginger_phase2.gff:Un    REPLACE mRNA    17798532        17853559        .       +       .       ID=mRNA_88442

grep '17798532' *.gff
ginger_all.gff:Un       AUGUSTUS        mRNA    17798532        17853559        0.01    +       .       ID=Un-g106156.t1;Parent=Un-g106156.t1;Name=Augustus%20prediction
ginger_all.gff:Un       AUGUSTUS        CDS     17798532        17800797        0.9     +       0       ID=cds.Un-g106156.t1;Parent=Un-g106156.t1;Name=Augustus%20prediction
ginger_augustus.gff:Un  AUGUSTUS        mRNA    17798532        17853559        0.01    +       .       ID=Un-g106156.t1;Parent=Un-g106156.t1;Name=Augustus%20prediction
ginger_augustus.gff:Un  AUGUSTUS        CDS     17798532        17800797        1.000   +       0       ID=cds.Un-g106156.t1;Parent=Un-g106156.t1;Name=Augustus%20prediction
ginger_phase1.gff:Un    REPLACE mRNA    17798532        17853559        .       +       .       ID=mRNA_88442
ginger_phase1.gff:Un    REPLACE CDS     17798532        17800797        .       +       0       ID=mRNA_88442.cds1;Parent=mRNA_88442
ginger_phase2.gff:Un    REPLACE mRNA    17798532        17853559        .       +       .       ID=mRNA_88442
ginger_phase2.gff:Un    REPLACE CDS     17798532        17800797        .       +       0       ID=mRNA_88442.cds1;Parent=mRNA_88442