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iDEP-SDSU
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idep
Integrated Differential Expression and Pathway analysis
http://ge-lab.org/idep
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ShinyGO UI improvements; notification for species matched
#182
gexijin
closed
2 years ago
0
Redundant pathways now require names matching 50%
#181
gexijin
closed
2 years ago
0
ShinyGO move filters out of findoverlap function
#180
gexijin
closed
2 years ago
0
default option for sorting pathways in ShinyGO
#179
gexijin
closed
2 years ago
0
ShinyGO additional sorting options
#178
gexijin
closed
2 years ago
0
ShinyGO 0.76 upgrade become default
#177
gexijin
closed
2 years ago
0
ShinyGO 0.76
#176
gexijin
closed
2 years ago
0
default aspect ratio ShinyGO
#175
gexijin
closed
2 years ago
0
ShinyGO defaults to sorting with both FDR and Fold
#174
gexijin
closed
2 years ago
0
bug fix on ShinyGO gene filtering
#173
gexijin
closed
2 years ago
0
separate the ranking and filtering of pathways shinygo
#172
gexijin
closed
2 years ago
0
Transcript ID partially converted to genId
#171
ramay
opened
2 years ago
1
Access to database 105 (iDEP 95 db)
#170
Akusem
closed
2 years ago
1
Example Gene IDS produces error for mouse
#169
slsevilla
closed
2 years ago
1
Could not connect to database: unable to open database file
#168
kamalmdmostafa
closed
2 years ago
1
KEGG pathway not being displayed
#167
mgalland
closed
2 years ago
5
[BUG] High resolution figure download button not working in PCA > Pathway Analysis of PCA rotation
#166
Akusem
closed
2 years ago
1
Background excluded in ShinyGO
#165
Jelinek-J
closed
2 years ago
2
data dir not correct
#164
daaaaande
closed
2 years ago
1
Server 15
#163
gexijin
closed
2 years ago
0
[ShinyGo] gene expression level?
#162
AgatioDev
opened
3 years ago
1
TPM?
#161
AgatioDev
closed
2 years ago
2
I have a problem about pathwayDB!
#160
luozhy88
closed
2 years ago
2
Dev
#159
gexijin
closed
3 years ago
0
STRING API species dropdown menu?
#158
marwa38
closed
2 years ago
2
border
#157
gexijin
closed
3 years ago
0
Dev
#156
gexijin
closed
3 years ago
0
attempted to include STRING species geneInfo
#155
gexijin
closed
3 years ago
0
message
#154
gexijin
closed
3 years ago
0
message
#153
gexijin
closed
3 years ago
0
announcement
#152
gexijin
closed
3 years ago
0
idep 0.95 and shiniygo 0.75
#151
gexijin
closed
3 years ago
0
Ben
#150
bderenge
closed
3 years ago
0
limit memory usage by container to 12 Gb
#149
gexijin
closed
3 years ago
0
Which method is used, either limma or DESeq2?
#148
wonwill
closed
2 years ago
1
Fix large empty border around iDEP UI
#147
Akusem
closed
3 years ago
0
minor genome plot iDEP
#146
gexijin
closed
3 years ago
0
idep genome plot update
#145
gexijin
closed
3 years ago
0
Ben
#144
bderenge
closed
3 years ago
0
Ben reads
#143
bderenge
closed
3 years ago
0
Enhance human and mouse related gene network analysis
#142
gexijin
opened
3 years ago
0
Ben test
#141
bderenge
closed
3 years ago
0
Atlantic Salmon Ensembl?
#140
marwa38
closed
3 years ago
6
test
#139
gexijin
closed
3 years ago
0
Ben test
#138
gexijin
closed
3 years ago
0
Background genes in iDEP
#137
gexijin
closed
2 years ago
0
Update instructions for local execution with Docker
#136
villegar
opened
3 years ago
0
Revert to old database
#135
gexijin
closed
3 years ago
0
message
#134
gexijin
closed
3 years ago
0
Added comments and fixed spacings. Code now reads Dee2 using functions…
#133
bderenge
closed
3 years ago
1
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