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iTaxoTools
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TaxI2-legacy
Calculates genetic differences between DNA sequences
GNU General Public License v3.0
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Adds clearing of previous results
#69
necrosovereign
closed
3 years ago
0
Updated default scores
#68
necrosovereign
closed
3 years ago
0
Problem with alignment algorithm when sequences are very divergent
#67
mvences
closed
3 years ago
2
Distance calculation using Rust
#66
necrosovereign
closed
3 years ago
0
Disable plotting when there is no species information
#65
necrosovereign
closed
3 years ago
0
Pyinstaller support
#64
StefanPatman
closed
3 years ago
0
Filter tabfile columns
#63
StefanPatman
closed
3 years ago
2
Problem when compiling TaxI2
#62
mvences
closed
3 years ago
2
Small issues with new version of TaxI2
#61
mvences
closed
3 years ago
2
Modification for the "reference comparison" mode
#60
necrosovereign
closed
3 years ago
0
Additional changes to multiprocessing
#59
necrosovereign
closed
3 years ago
0
Feature multiprocessing
#58
necrosovereign
closed
3 years ago
0
Minor changes in GUI
#57
mvences
closed
3 years ago
0
Disable incompatible functions with "All against all" mode
#56
mvences
closed
3 years ago
0
Disable incompatible functions with "Compare against reference" mode
#55
mvences
closed
3 years ago
0
Possible fix for aligner memory leak
#54
necrosovereign
closed
3 years ago
0
Fixed bug in showing progress
#53
necrosovereign
closed
3 years ago
0
Added memory cleanup
#52
necrosovereign
closed
3 years ago
0
"Compare against reference database" also having memory issues
#51
mvences
closed
3 years ago
21
Comparison against references for tabfiles
#50
necrosovereign
closed
3 years ago
0
Implement "Compare against reference sequence database" option
#49
mvences
closed
3 years ago
2
Clustering additions and small fixes
#48
necrosovereign
closed
3 years ago
0
Fixed distanced calculation for already aligned sequences
#47
necrosovereign
closed
3 years ago
0
Excessively large distances with "already aligned" sequences
#46
mvences
closed
3 years ago
9
Calculate alignment only when requested
#45
necrosovereign
closed
3 years ago
0
Memory usage improved but still cannot align and process >300 sequences
#44
mvences
closed
3 years ago
5
Fixed alignment printing
#43
necrosovereign
closed
3 years ago
0
Program does not complete the analysis when printing sequence alignments
#42
mvences
closed
3 years ago
0
Optimized processing algorithm
#41
necrosovereign
closed
3 years ago
0
Show the progress in the preview textbox
#40
necrosovereign
closed
3 years ago
0
IMPORTANT: Need to be able to run large files in Taxi2 - add progress information and option for large files - automatic output
#39
mvences
closed
3 years ago
12
Change clustering default threshold to 5% = 0.05
#38
mvences
closed
3 years ago
0
Taxi2 does not function with fasta file
#37
mvences
closed
3 years ago
0
Avoid negative sign for zero in clustering output
#36
mvences
closed
3 years ago
0
"spart" output for clustering analysis
#35
necrosovereign
closed
3 years ago
0
Finishes main clustering functionality
#34
necrosovereign
closed
3 years ago
0
Implement "spart" output for clustering results
#33
mvences
closed
3 years ago
0
Additional clustering output
#32
mvences
closed
3 years ago
0
Basic clustering functionality
#31
necrosovereign
closed
3 years ago
0
Implement simple clustering function in TaxI2
#30
mvences
closed
3 years ago
5
Gui changes and graphs preview
#29
necrosovereign
closed
3 years ago
0
Implement Figure preview also in Taxi2
#28
mvences
closed
3 years ago
0
Changes in GUI
#27
mvences
closed
3 years ago
0
Fixed the mistake in translating inter-genus into inter-species
#26
necrosovereign
closed
3 years ago
0
New histograms not working
#25
mvences
closed
3 years ago
2
Additional histograms
#24
necrosovereign
closed
3 years ago
0
Input robustness
#23
necrosovereign
closed
3 years ago
0
Implement additional variants of figures
#22
mvences
closed
3 years ago
0
Make Taxi2 more robust against deviations in input format
#21
mvences
closed
3 years ago
1
Splitting output
#20
necrosovereign
closed
3 years ago
1
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