Knime4NGS is a set of custom KNIME nodes, designed for processing large next generation sequencing datasets. The nodes wrap functionalities of popular command line tools like BWA, Samtools and GATK and allow an easy creation of comprehensive NGS KNIME workflows.
For more information about KNIME4NGS, see our project website http://ibisngs.github.io/knime4ngs/ that includes a quick start guide and a comprehensive documentation including detailed descriptions and usage examples.