icgc-argo-workflows dna-seq-processing-wfs issues

icgc-argo-workflows / dna-seq-processing-wfs

ICGC ARGO DNA-Seq Processing Workflow

GNU Affero General Public License v3.0

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Dna seq alignment@1.9.2

#70 lindaxiang closed 1 year ago
0
Dna seq alignment@1.9.1

#69 lindaxiang closed 1 year ago
0
Update the workflow to use new version of song/score modules

#68 lindaxiang closed 1 year ago
3
Add an options to enable/disable `alignedSeqQC` and `rgQC` in workflow

#67 lindaxiang closed 9 months ago
1
Dna seq alignment@1.9.0

#66 lindaxiang closed 3 years ago
1
Dna seq alignment@1.8.1

#65 junjun-zhang closed 3 years ago
0
update payload-gen-seq-experiment dependency to 0.5.0

#64 junjun-zhang closed 3 years ago
1
Dna seq alignment@1.8.0

#63 junjun-zhang closed 3 years ago
0
register ARGO alignment workflow in Dockstore

#62 junjun-zhang opened 3 years ago
3
Update alignment workflow to use updated payload gen tool packages

#61 junjun-zhang closed 3 years ago
1
Dna seq alignment@1.7.0

#60 junjun-zhang closed 3 years ago
0
Dna seq alignment@1.6.1

#59 junjun-zhang closed 3 years ago
0
Dna seq alignment@1.6.0

#58 junjun-zhang closed 3 years ago
0
added base files required by wfpm

#57 junjun-zhang closed 3 years ago
0
update oxog tool and add metadata-parser tool, add test cases

#56 lindaxiang closed 3 years ago
2
1.5.5 dev

#55 junjun-zhang closed 3 years ago
0
add params.publish_dir

#54 junjun-zhang closed 3 years ago
0
Handle nan oxog score

#53 lindaxiang closed 3 years ago
0
update payload-gen-dna-alignment which ensures cram/crai basename match

#52 junjun-zhang closed 3 years ago
0
1.4.1 dev

#51 junjun-zhang closed 3 years ago
0
1.4.0 dev

#50 junjun-zhang closed 3 years ago
0
upgrade the song/score modules to 2.1.0

#49 rosibaj closed 3 years ago
1
update to new payload gens for session-id

#48 junjun-zhang closed 4 years ago
0
Optimization: to reduce simultaneous read requests from the same very large file, convert parallel execution of these tasks into sequential

#47 junjun-zhang closed 4 years ago
2
Schema update 2

#46 junjun-zhang closed 4 years ago
0
Update bwa-mem-aligner and song-score-util

#45 junjun-zhang closed 4 years ago
0
Schema update

#44 junjun-zhang closed 4 years ago
0
Song client update

#43 junjun-zhang closed 4 years ago
0
Update to Song/Score

#42 lepsalex closed 4 years ago
0
update payGen for ubamqc with song friendly name

#41 junjun-zhang closed 4 years ago
0
Naming convention update and add support for tempdir

#40 junjun-zhang closed 4 years ago
0
pickup updated song/score modules hiding api tokens

#39 junjun-zhang closed 4 years ago
0
parameterize container registry

#38 junjun-zhang opened 4 years ago
1
Pickup updated song/score utility tools

#37 junjun-zhang closed 4 years ago
1
Rg id overwrite

#36 junjun-zhang closed 4 years ago
0
update bwa-mem-aligner that handles special char in rg_id

#35 junjun-zhang closed 4 years ago
0
Config update

#34 junjun-zhang closed 4 years ago
0
update to new payload gen version

#33 junjun-zhang closed 4 years ago
0
Adjustments

#32 junjun-zhang closed 4 years ago
0
Scatter oxog

#31 junjun-zhang closed 4 years ago
0
Cleanup

#30 junjun-zhang closed 4 years ago
0
Update qc metrics

#29 junjun-zhang closed 4 years ago
0
Update samtools biobambam and other performance optimization

#28 junjun-zhang closed 4 years ago
0
Update tools

#27 junjun-zhang closed 4 years ago
0
Samtools test

#26 lindaxiang closed 4 years ago
0
0.4.0 rc.3

#25 junjun-zhang closed 4 years ago
1
0.4.0 rc.2

#24 junjun-zhang closed 4 years ago
0
0.4.0 dev

#23 junjun-zhang closed 4 years ago
0
Song integration

#22 junjun-zhang closed 4 years ago
0
Dna seq alignment.0.2.9.1

#21 junjun-zhang closed 4 years ago
1