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icgc-argo-workflows
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dna-seq-processing-wfs
ICGC ARGO DNA-Seq Processing Workflow
GNU Affero General Public License v3.0
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Dna seq alignment@1.9.2
#70
lindaxiang
closed
1 year ago
0
Dna seq alignment@1.9.1
#69
lindaxiang
closed
1 year ago
0
Update the workflow to use new version of song/score modules
#68
lindaxiang
closed
1 year ago
3
Add an options to enable/disable `alignedSeqQC` and `rgQC` in workflow
#67
lindaxiang
closed
9 months ago
1
Dna seq alignment@1.9.0
#66
lindaxiang
closed
3 years ago
1
Dna seq alignment@1.8.1
#65
junjun-zhang
closed
3 years ago
0
update payload-gen-seq-experiment dependency to 0.5.0
#64
junjun-zhang
closed
3 years ago
1
Dna seq alignment@1.8.0
#63
junjun-zhang
closed
3 years ago
0
register ARGO alignment workflow in Dockstore
#62
junjun-zhang
opened
3 years ago
3
Update alignment workflow to use updated payload gen tool packages
#61
junjun-zhang
closed
3 years ago
1
Dna seq alignment@1.7.0
#60
junjun-zhang
closed
3 years ago
0
Dna seq alignment@1.6.1
#59
junjun-zhang
closed
3 years ago
0
Dna seq alignment@1.6.0
#58
junjun-zhang
closed
3 years ago
0
added base files required by wfpm
#57
junjun-zhang
closed
3 years ago
0
update oxog tool and add metadata-parser tool, add test cases
#56
lindaxiang
closed
3 years ago
2
1.5.5 dev
#55
junjun-zhang
closed
3 years ago
0
add params.publish_dir
#54
junjun-zhang
closed
3 years ago
0
Handle nan oxog score
#53
lindaxiang
closed
3 years ago
0
update payload-gen-dna-alignment which ensures cram/crai basename match
#52
junjun-zhang
closed
3 years ago
0
1.4.1 dev
#51
junjun-zhang
closed
3 years ago
0
1.4.0 dev
#50
junjun-zhang
closed
3 years ago
0
upgrade the song/score modules to 2.1.0
#49
rosibaj
closed
3 years ago
1
update to new payload gens for session-id
#48
junjun-zhang
closed
4 years ago
0
Optimization: to reduce simultaneous read requests from the same very large file, convert parallel execution of these tasks into sequential
#47
junjun-zhang
closed
4 years ago
2
Schema update 2
#46
junjun-zhang
closed
4 years ago
0
Update bwa-mem-aligner and song-score-util
#45
junjun-zhang
closed
4 years ago
0
Schema update
#44
junjun-zhang
closed
4 years ago
0
Song client update
#43
junjun-zhang
closed
4 years ago
0
Update to Song/Score
#42
lepsalex
closed
4 years ago
0
update payGen for ubamqc with song friendly name
#41
junjun-zhang
closed
4 years ago
0
Naming convention update and add support for tempdir
#40
junjun-zhang
closed
4 years ago
0
pickup updated song/score modules hiding api tokens
#39
junjun-zhang
closed
4 years ago
0
parameterize container registry
#38
junjun-zhang
opened
4 years ago
1
Pickup updated song/score utility tools
#37
junjun-zhang
closed
4 years ago
1
Rg id overwrite
#36
junjun-zhang
closed
4 years ago
0
update bwa-mem-aligner that handles special char in rg_id
#35
junjun-zhang
closed
4 years ago
0
Config update
#34
junjun-zhang
closed
4 years ago
0
update to new payload gen version
#33
junjun-zhang
closed
4 years ago
0
Adjustments
#32
junjun-zhang
closed
4 years ago
0
Scatter oxog
#31
junjun-zhang
closed
4 years ago
0
Cleanup
#30
junjun-zhang
closed
4 years ago
0
Update qc metrics
#29
junjun-zhang
closed
4 years ago
0
Update samtools biobambam and other performance optimization
#28
junjun-zhang
closed
4 years ago
0
Update tools
#27
junjun-zhang
closed
4 years ago
0
Samtools test
#26
lindaxiang
closed
4 years ago
0
0.4.0 rc.3
#25
junjun-zhang
closed
4 years ago
1
0.4.0 rc.2
#24
junjun-zhang
closed
4 years ago
0
0.4.0 dev
#23
junjun-zhang
closed
4 years ago
0
Song integration
#22
junjun-zhang
closed
4 years ago
0
Dna seq alignment.0.2.9.1
#21
junjun-zhang
closed
4 years ago
1
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