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icgc-argo / argo-clinical

Clinical data submission for ARGO programs.
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Exception Manifest - 2 - Add Exception Manifest to Clinical Data TSV Endpoint #1143

Closed joneubank closed 2 months ago

joneubank commented 4 months ago

Update the Clinical Data TSV Download endpoint to include an exceptions manifest file.

Detailed Description

  1. Use the function created in https://github.com/icgc-argo/argo-clinical/issues/1142 to generate the exception records
  2. Convert those records into a TSV file
  3. Add this TSV file to the output with the file name exceptions_manifest.tsv

Possible Implementation

Existing functions should be available to do the data to TSV conversion, just need to ensure this works correctly with the exception records.