icgc-argo / argo-clinical

Clinical data submission for ARGO programs.
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De-register 68 APGI-AU donors confirmed by project to not have have the required ARGO core clinical data #645

Closed hknahal closed 3 years ago

hknahal commented 3 years ago

The APGI-AU dashboard shows 159 registered donors (https://platform.icgc-argo.org/submission/program/APGI-AU/dashboard) but the APGI-AU program recently confirmed that they only have the core clinical data for 91 donors (which we imported SONG payloads to intermediate-song already). The following list of 68 donors will need to be removed from clinical since there will be no core clinical data submitted for these. I confirmed there are no intermediate-song analyses attached to any of these donors:

donor_id    submitter_donor_id
DO32833 ICGC_0007
DO32860 ICGC_0020
DO32976 ICGC_0053
DO32980 ICGC_0054
DO33016 ICGC_0063
DO33028 ICGC_0066
DO33128 ICGC_0108
DO33152 ICGC_0105
DO33168 ICGC_0099
DO33184 ICGC_0109
DO33200 ICGC_0206
DO33208 ICGC_0205
DO33264 ICGC_0207
DO33344 ICGC_0087
DO33400 ICGC_0140
DO33472 ICGC_0141
DO33488 ICGC_0150
DO33512 ICGC_0114
DO33544 ICGC_0153
DO33552 ICGC_0149
DO33600 ICGC_0169
DO33960 ICGC_0212
DO34240 ICGC_0188
DO34288 ICGC_0223
DO34312 ICGC_0315
DO34336 ICGC_0217
DO34368 ICGC_0235
DO34432 ICGC_0214
DO34504 ICGC_0230
DO34600 ICGC_0199
DO34608 ICGC_0201
DO34616 ICGC_0224
DO34640 ICGC_0227
DO34656 ICGC_0185
DO34680 ICGC_0192
DO34696 ICGC_0296
DO34720 ICGC_0301
DO34728 ICGC_0313
DO34736 ICGC_0303
DO34785 ICGC_0304
DO34801 ICGC_0295
DO34849 ICGC_0326
DO34905 ICGC_0321
DO34961 ICGC_0338
DO49074 ICGC_0354
DO49076 ICGC_0391
DO49078 ICGC_0124
DO49079 ICGC_0392
DO49080 ICGC_0393
DO49087 ICGC_0395
DO49090 ICGC_0486
DO49113 ICGC_0406
DO49127 ICGC_0412
DO49129 ICGC_0365
DO49133 ICGC_0415
DO49135 ICGC_0417
DO49137 ICGC_0419
DO49138 ICGC_0420
DO49166 ICGC_0535
DO49168 ICGC_0536
DO49172 ICGC_0502
DO49174 ICGC_0503
DO49178 ICGC_0518
DO49181 ICGC_0507
DO49183 ICGC_0521
DO49184 ICGC_0522
DO49193 ICGC_0526
DO49204 ICGC_0543
joneubank commented 3 years ago

Donors removed and donor index regenerated. 91 Donors shown in dashboard now.Screen Shot 2021-03-26 at 11.45.32 AM.png

rosibaj commented 3 years ago

checked on prod lgtm! thanks @joneubank !