idem-lab map-ir-pipeline issues

idem-lab / map-ir-pipeline

Prototype demonstration of stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010

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issues

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update renv to use current latest versions of packages installed.

#98 njtierney opened 4 days ago
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adds the country shapefile to the pixel plot

#97 njtierney opened 5 days ago
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Explore animating the plots over time

#96 njtierney opened 5 days ago
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Plot each year insecticide 79

#95 njtierney closed 5 days ago
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update map-covariates README

#94 geryan closed 5 days ago
1
Functionally temporal lags

#93 njtierney closed 1 week ago
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Explore parallelisation options with geotargets and splitting rasters up into smaller tiles

#92 njtierney opened 1 week ago
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Tidy/document targets file

#91 goldingn opened 1 week ago
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Produce clearer validation results. for when to trust the model outputs

#90 goldingn opened 1 week ago
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Add country outlines to country prediction plots

#89 goldingn opened 1 week ago
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plot available data for the selected country

#88 goldingn opened 1 week ago
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about to sort out where to invert transformed mortality

#87 njtierney closed 1 week ago
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write a test to ensure emplogit / invlogit pairs return the same data

#86 njtierney opened 1 week ago
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Make it easier to bundle up many rasters

#85 njtierney opened 1 week ago
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explore vsizip to download rasters at specific extents

#84 njtierney opened 1 week ago
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Adding covariates for #78

#83 njtierney closed 1 week ago
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first crack at inverting the pct mortality step

#82 njtierney closed 1 week ago
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Some fixes for #79

#81 njtierney closed 1 week ago
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convert predictions to proportional susceptibility

#80 goldingn closed 1 week ago
2
plot all years for each insecticide

#79 goldingn closed 5 days ago
10
Add MAP covariates

#78 goldingn closed 1 week ago
2
add temporal lags to covariates

#77 goldingn closed 1 week ago
11
level 0 models use lat/long as features

#76 goldingn closed 1 month ago
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Some minor tweaks (that might not be necessary)

#75 njtierney closed 1 month ago
2
Bring over Penny's code to use INLA space-time model as the level 1 stacker

#74 goldingn closed 1 week ago
3
implement INLA workflow

#73 njtierney closed 1 week ago
2
Investigate issues around using {renv} with {targets}

#72 njtierney opened 7 months ago
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Much more efficient method for extracting country names

#71 njtierney closed 7 months ago
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geocoding step is reeeaaal slow

#70 goldingn closed 7 months ago
2
example raster downloads have dead (for me) URLs

#69 goldingn closed 7 months ago
1
package installation errors

#68 goldingn closed 1 week ago
4
minor tweaks to internals.

#67 njtierney closed 7 months ago
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Make README instructive

#66 njtierney opened 7 months ago
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remember to manage the length of the predictions in `inner_loop()`/`spatial_prediction()`/`model_validation()`

#65 njtierney opened 7 months ago
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Check if model inputs are missing

#64 njtierney opened 7 months ago
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Ensuring raster covariate data is in the right shape/names/dimensions for `spatial_prediction()`

#63 njtierney opened 7 months ago
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Does insecticide_id need to be a factor?

#62 njtierney closed 2 weeks ago
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better code up / cache the geocoding steps

#61 njtierney closed 7 months ago
1
Various:

#60 njtierney closed 7 months ago
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move various checking function into a central checking document

#59 njtierney closed 7 months ago
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Implement new modelling API discussed in #56

#58 njtierney closed 7 months ago
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closes #54

#57 njtierney closed 7 months ago
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Reworking modelling work into two functions: `model_validation` and `spatial_prediction`

#56 njtierney closed 7 months ago
1
Refactor intent

#55 njtierney closed 8 months ago
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Use as.integer(as.factor()) on insecticide to get insecticide ID instead of group_by() cur_group_id() workflow

#54 njtierney closed 7 months ago
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refactor/rename internal functions in targets for clarity

#53 njtierney closed 7 months ago
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L1 each insecticide 50

#52 njtierney closed 8 months ago
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Efficiently fitting L1 model for each insecticide

#51 njtierney closed 1 week ago
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Fit L1 model for each insecticide

#50 njtierney closed 8 months ago
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condense certain steps into named lists that are saved elsewhere

#49 njtierney opened 8 months ago
0