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idem-lab
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map-ir-pipeline
Prototype/pseudo code demonstrating stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010
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implement INLA workflow
#73
njtierney
opened
2 weeks ago
1
Investigate issues around using {renv} with {targets}
#72
njtierney
opened
3 weeks ago
0
Much more efficient method for extracting country names
#71
njtierney
closed
1 month ago
0
geocoding step is reeeaaal slow
#70
goldingn
closed
1 month ago
2
example raster downloads have dead (for me) URLs
#69
goldingn
closed
1 month ago
1
package installation errors
#68
goldingn
opened
1 month ago
3
minor tweaks to internals.
#67
njtierney
closed
1 month ago
0
Make README instructive
#66
njtierney
opened
1 month ago
0
remember to manage the length of the predictions in `inner_loop()`/`spatial_prediction()`/`model_validation()`
#65
njtierney
opened
1 month ago
0
Check if model inputs are missing
#64
njtierney
opened
1 month ago
0
Ensuring raster covariate data is in the right shape/names/dimensions for `spatial_prediction()`
#63
njtierney
opened
1 month ago
0
Does insecticide_id need to be a factor?
#62
njtierney
opened
1 month ago
0
better code up / cache the geocoding steps
#61
njtierney
closed
1 month ago
1
Various:
#60
njtierney
closed
1 month ago
0
move various checking function into a central checking document
#59
njtierney
closed
1 month ago
0
Implement new modelling API discussed in #56
#58
njtierney
closed
1 month ago
0
closes #54
#57
njtierney
closed
1 month ago
0
Reworking modelling work into two functions: `model_validation` and `spatial_prediction`
#56
njtierney
closed
1 month ago
1
Refactor intent
#55
njtierney
closed
1 month ago
0
Use as.integer(as.factor()) on insecticide to get insecticide ID instead of group_by() cur_group_id() workflow
#54
njtierney
closed
1 month ago
0
refactor/rename internal functions in targets for clarity
#53
njtierney
closed
1 month ago
0
L1 each insecticide 50
#52
njtierney
closed
1 month ago
0
Efficiently fitting L1 model for each insecticide
#51
njtierney
opened
2 months ago
0
Fit L1 model for each insecticide
#50
njtierney
closed
1 month ago
0
condense certain steps into named lists that are saved elsewhere
#49
njtierney
opened
2 months ago
0
use geotargets?
#48
njtierney
closed
1 month ago
1
How to use plot with targets?
#47
njtierney
closed
2 months ago
0
pre processing steps
#46
njtierney
opened
2 months ago
0
Use multiple countries
#45
njtierney
closed
2 months ago
0
Get workflow to work with multiple countries selected
#44
njtierney
closed
2 months ago
0
Ensure workflow works or flags error when phenotypic/genotypic data ratio is off
#43
njtierney
opened
2 months ago
2
Clarify where Hancock et al Spatial data is sourced from
#42
njtierney
opened
2 months ago
0
Reformat and use data from Hancock et al repo in pipeline to validate/test results
#41
njtierney
opened
2 months ago
2
Add new type data 30
#40
njtierney
closed
2 months ago
0
make raster extraction names consistent - resolves #25
#39
njtierney
closed
2 months ago
0
Predicting out to rasters in the final outer loop
#38
njtierney
closed
2 months ago
1
Considering how to wrap this up as software - pipeline vs package vs pipeline creation package?
#37
njtierney
opened
2 months ago
0
Consider how to batch up how predictions are done in the `inner_loop` model
#36
njtierney
opened
2 months ago
0
Clean up TODO items into issues in the repo
#35
njtierney
closed
1 month ago
0
Try to carefully read/subset raster data to avoid huge downloads
#34
njtierney
opened
2 months ago
0
L0 models 28
#33
njtierney
closed
2 months ago
0
"generation" column contains too many missing values
#32
njtierney
opened
2 months ago
0
Drop spatial covariates if they have missing data
#31
njtierney
closed
1 month ago
1
determine type of identification -
#30
njtierney
closed
1 month ago
2
a note on previous covariate names/storage from hancock et al
#29
njtierney
opened
2 months ago
0
get L0 models to work with new spatial covariates
#28
njtierney
closed
2 months ago
0
extract raster to data 22
#27
njtierney
closed
2 months ago
0
extract covariate names of spatial data as a target
#26
njtierney
closed
2 months ago
0
give spatial covariate extractions common target names
#25
njtierney
closed
2 months ago
0
crop the rasters to the specified country
#24
njtierney
closed
2 months ago
0
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