You can install it directly by pip install annopro
or install from source code as following steps.
git clone https://github.com/idrblab/AnnoPRO.git
cd AnnoPRO
conda create -n annopro python=3.8
conda activate annopro
pip install .
annopro -h
.
annopro -i test_proteins.fasta -o output
python -m annopro -i test_proteins.fasta -o output
from annopro import main
main("test_proteins.fasta", "output")
The result is displayed in the ./output/bp(cc,mf)_result.csv
.
Notice: if you use annopro for the first time, annopro will automatically download required resources when they are used (lazy download mechanism)
Your pip is latest, back to old version such as 20.2, or just add --use-deprecated=legacy-resolver
param.
If any questions, please create an issue on this repo, we will deal with it as soon as possible.