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igvteam
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igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
https://igv.org
MIT License
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BAM files not loading in local IGV on Linux
#1567
aboyd003
closed
2 months ago
13
Add basemod colors for 3 chebi codes. See #1563
#1566
jrobinso
closed
2 months ago
0
How to view 'linked read' in IGV?
#1565
kuangzhuoran
closed
2 months ago
5
Improve behavior of the Hide small indels menu option
#1564
lbergelson
closed
2 months ago
0
Support for coloring of ChEBI Modified Base Codes
#1563
marcus1487
opened
2 months ago
5
Delete unused Apache Tomcat Utils package
#1562
lbergelson
closed
2 months ago
1
Error while querying reads in gnome terminal
#1561
aamahale
opened
2 months ago
4
GRCh37/hg19 alias missing chr23
#1560
MayTheForestBeWithYou
closed
2 months ago
12
Google Cloud OAuth Failed
#1559
iimpulse
closed
2 months ago
1
Support for Stranded RNA-seq Data Using BAM File Tags
#1558
rLannes
closed
2 months ago
15
Could not connect to the genome server from Chinese mainland
#1557
cyk64
closed
2 months ago
4
Access forbidden when trying to load T2T CHM13-v1.1 and T2T CHM13-v2.0/hs1
#1556
cheehongsg
closed
2 months ago
13
Feature request: generating HGVS compliant nomenclature for a selected variant
#1555
dsonkin
opened
2 months ago
3
Discrepancy Between IGV and pysam Reads Statistics for Specific Genomic Position
#1554
chaopower-zhang
closed
2 months ago
0
Genome loading refactor to recover gracefully on startup errors
#1553
jrobinso
closed
2 months ago
0
Error Message after installing 2.18 version in windows. Error "Cannot invoke 'Java.io.bufferedreader.close()' because reader is null"
#1552
Jeevankumar404346
opened
2 months ago
6
question: increase visibility of SNPs at wider views?
#1551
kevfengler227
opened
2 months ago
24
"Read Order" is wrong in "Supplementary Reads Diagram"
#1550
simondrue
closed
2 months ago
2
Make IGV session file
#1549
diego-rt
closed
2 months ago
2
Cigar string doesn't match IGV read visualization
#1548
tanyasarkjain
opened
3 months ago
3
Feature Request: Recently opened files
#1547
jonn-smith
opened
3 months ago
0
SpliceJunction tracks now honor manual color setttings
#1546
lbergelson
closed
3 months ago
0
Incorrect parsing of MM/ML tags with no "." or "?"
#1545
Shians
closed
3 months ago
4
Update dependencies to fix vulnerabilities
#1544
lbergelson
closed
3 months ago
0
Move the amazon credentials check at startup into an async thread
#1543
lbergelson
closed
3 months ago
6
Adding additional options for duplicate reads.
#1542
lbergelson
closed
3 months ago
4
RefSeq transcripts: only one appears in the pop-up list when in collapsed mode (from IGV 2.17.x)
#1541
jrobinso
closed
3 months ago
0
When I use igvtools count, keep getting error that " Cannot invoke "java.util.List.iterator()" because the return value of "org.broad.igv.feature.genome.Genome.getLongChromosomeNames()" is null"
#1540
leefall
closed
3 months ago
7
Suggestion for UX improvement
#1539
tadast
closed
3 months ago
4
Clicking on rule does not center view in 2.18.0
#1538
kevfengler227
closed
3 months ago
11
How do I load from server the Tutorial Dataset?
#1537
fantauzzi
closed
3 months ago
1
Cert Fail
#1536
HoyMart
opened
4 months ago
3
Shift in the visual representation of a junction
#1535
Mohamed-HAMICI
closed
3 months ago
7
batch model: how to set copy number range
#1534
lamz138138
closed
4 months ago
6
batch mode - what becomes track name? MaxPanelHeight for individual variant tracks?
#1533
mhooykaas
opened
4 months ago
3
Installing with admin privileges
#1532
shashwatsahay
closed
4 months ago
3
Support full mode for alignment tracks
#1531
jrobinso
closed
4 months ago
1
Error loading VCF: Tag Type in wrong order
#1530
jules-o
opened
4 months ago
2
Problem to data using if the URL is redirected
#1529
dercyc
closed
4 months ago
4
doesn't show RefGene from my custom genomefile.
#1528
saky7009
closed
5 months ago
1
[Feature suggestion] Jump to next soft-clip in BAM track
#1527
tetedange13
opened
5 months ago
0
Support specifying file format for URLS ("Tracks from presigned URL *without* the file extension")
#1526
SergejN
closed
5 months ago
7
From Ultima Genomics PR #1490
#1525
jrobinso
closed
5 months ago
0
How to batch unshow alignment track?
#1524
chrisikun
closed
5 months ago
1
Mac Desktop IGV only runs in the user account where IGV was downloaded
#1523
mkraghuraman
closed
3 months ago
13
Chromosome order
#1522
jrobinso
closed
5 months ago
0
.bed and .bedpe tracks not loading in IGV 2.17.4
#1521
virpa81
closed
5 months ago
2
Slow loading for assembly-assembly alignment bams
#1520
jrobinso
opened
6 months ago
2
Custom Genome and Visualizations
#1519
singhbhavya
opened
6 months ago
6
Download fails with "Virus scan failed" error
#1518
joshua-theisen
opened
6 months ago
1
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