Test neuroglancer with prediction output of Object Classification Workflow

ilastik / cloud_ilastik

APIs for running ilastik inside HPB infra

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Test neuroglancer with prediction output of Object Classification Workflow #58

Open m-novikov opened 4 years ago

m-novikov commented 4 years ago

We need to check how well neuroglancer handlers indexed color. We are interested in object classification output that is single-channel image with object index as value. Supposedly neuroglancer segmentation layer does the job. TODO:

[x] Test dataset uploaded to n5test
[ ] Neuroglancer link demonstrating this dataset

Tomaz-Vieira commented 4 years ago

Here's a sample output from object classification, as run by cloud ilastik:

swift download -p out_Object-Predictions_0fb1c52a-1236-459e-9f07-e2dc4935f730.n5 n5test

I should add that the repeating tiled image is not a bug. I just copy-pasted the same input image multiple times to make a bigger one