Cloud Ilastik

APIs for running ilastik workflows in a cloud

.. image:: https://img.shields.io/badge/built%20with-Cookiecutter%20Django-ff69b4.svg :target: https://github.com/pydanny/cookiecutter-django/ :alt: Built with Cookiecutter Django .. image:: https://img.shields.io/badge/code%20style-black-000000.svg :target: https://github.com/ambv/black :alt: Black code style

:License: GPLv3

Settings

Moved to settings_.

.. _settings: http://cookiecutter-django.readthedocs.io/en/latest/settings.html

Basic Commands

Setting Up Developement Environment ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

• To setup a dev environment, use this command

  $ make setup_dev

This will create superuser ilastik:ilastik

To enable HBP login run following command: $ python manage.py register_hbp_client

Setting Up Your Users ^^^^^^^^^^^^^^^^^^^^^

• To create a normal user account, just go to Sign Up and fill out the form. Once you submit it, you'll see a "Verify Your E-mail Address" page. Go to your console to see a simulated email verification message. Copy the link into your browser. Now the user's email should be verified and ready to go.

• To create an superuser account, use this command::

  $ python manage.py createsuperuser

For convenience, you can keep your normal user logged in on Chrome and your superuser logged in on Firefox (or similar), so that you can see how the site behaves for both kinds of users.

Type checks ^^^^^^^^^^^

Running type checks with mypy:

::

$ mypy cloud_ilastik

Test coverage ^^^^^^^^^^^^^

To run the tests, check your test coverage, and generate an HTML coverage report::

$ coverage run -m pytest
$ coverage html
$ open htmlcov/index.html

Running tests with py.test

::

  $ pytest

Live reloading and Sass CSS compilation
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Moved to `Live reloading and SASS compilation`_.

.. _`Live reloading and SASS compilation`: http://cookiecutter-django.readthedocs.io/en/latest/live-reloading-and-sass-compilation.html

Celery
^^^^^^

This app comes with Celery.

To run a celery worker:

.. code-block:: bash

    cd cloud_ilastik
    celery -A config.celery_app worker -l info

Please note: For Celery's import magic to work, it is important *where* the celery commands are run. If you are in the same folder with *manage.py*, you should be right.

Deployment
----------

The following details how to deploy this application.