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imgag / umiVar

Code-refactoring of umiVar tool.
MIT License
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support tumor only samples for select_monitoring_variants.py? #15

Open leonschuetz opened 2 years ago

leonschuetz commented 2 years ago

Currently only tumor-normal VCFs are supported.

leonschuetz commented 2 years ago

Current error:

Stderr of '..../git/umiVar2//venv/bin/python':
    Traceback (most recent call last):
      File "..../git/umiVar2//select_monitoring_variants.py", line 402, in <module>
        main()
      File "..../git/umiVar2//select_monitoring_variants.py", line 396, in main
        evaluator.evaluate_variants(input_ref_file)
      File "..../git/umiVar2//select_monitoring_variants.py", line 131, in evaluate_variants
        tumor_sample = vcf_column[10].split(":")
    IndexError: list index out of range