Portal for alien and invasive species indicators
Enkele relevante URLS:
The dockerfile needs to be updated only when some of the dependencies for alienSpecies
changed.
This file is generated automatically by packamon: please do not edit by hand.
The following commands are run to update this dockerfile.
if (!require(packamon))
install.packages("packamon", repos = c(rdepot = "https://repos.openanalytics.eu/repo/public", getOption("repos")))
library(packamon)
writeDockerfile(sourceDir = ".", installSource = TRUE,
overwrite = TRUE, shinyFunction = "alienSpecies::runShiny()")
Then, to build the docker image with the latest dockerfile, run in bash
cd git/alien-species-portal
docker build -t inbo/alienspecies .
Run the new docker image from bash. You need to point docker to the .aws folder on your local system to retrieve the credentials.
docker run -it -v ~/.aws:/root/.aws -p 3001:3838 inbo/alienspecies R -e "alienSpecies::setupS3(); alienSpecies::runShiny()"
The latest translations file is available in the aspbo project. Make sure you navigate to the correct branch.
It is located in the folder: data/output/UAT_direct/translations.csv
IMPORTANT: Make sure that you don't change the structure of the translations file (column names, delimiter), otherwise the application will fail to start! The file will be updated on the S3 bucket automatically.