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🌳 Calculation of the nature indicators for Flanders
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Invasieven indicatoren 2019 Update #16

Closed SanderDevisscher closed 5 years ago

SanderDevisscher commented 5 years ago

Het script voor de aanmaak van de grafieken dient herschreven te worden zodat deze gemaakt worden met de trias package.

SanderDevisscher commented 5 years ago

@timadriaens Even een stvz op de unified checklist gebaseerde indicatoren (zie Invasives_checklist_based_indicators.Rmd

Aantal eerste waarnemingen per jaar:

Invasives_first_observed_habitat

nog enkele vragen

Tabellen pathways:

2 levels

pathway_level1 pathway_level2 n examples
contaminant 5 Rangia cuneata , Proterorhinus semilunaris , Dreissena bugensis , Neogobius melanostomus , Rattus norvegicus
contaminant animal_parasite 4 Hoplopleura erismata , Gyrodactylus proterorhini , Mastophorus , Enderleinellus kumadai
contaminant food 1 Chaetopelma olivaceum
contaminant habitat_material 14 Caenoplana bicolor , Hygromia cinctella , Bipalium kewense , Oenothera moravica , Eumodicogryllus bordigalensis
contaminant nursery 4 Cardamine corymbosa , Wolffia columbiana , Acalypha indica , Phyllanthus tenellus
contaminant on_animals 3 Eleocharis engelmannii , Nicotiana glauca , Bolboschoenus yagara Ohwi YCYang MZhan
contaminant on_plants 11 Pseudagrion microcephalum , Cameraria gaultheriella , Paysandisia archon , Callidiellum rufipennis , Anoplophora chinensis
contaminant seed 47 Ranunculus pensylvanicus , Zingeria pisidica Boiss Tutin, Conringia planisiliqua , Tripleurospermum decipiens Fisch Mey Bornm, Ornithogalum narbonense
contaminant timber 2 Carex loliacea , Melampyrum nemorosum
corridor 9 Nyctereutes procyonoides , Proterorhinus semilunaris , Procyon lotor , Neogobius melanostomus , Dreissena bugensis
corridor water 9 Neogobius melanostomus , Echinogammarus trichiatus , Limnomysis benedeni , Proterorhinus semilunaris , Dreissena bugensis
escape 8 Nyctereutes procyonoides , Procyon lotor , Castor canadensis , Ondatra zibethicus , Cortaderia selloana
escape agriculture 1 Valerianella locusta var oleracea Schltdl Breistr
escape aquaculture 6 Synurella ambulans , Acipenser ruthenus , Sinelobus vanhaareni , Procambarus clarkii , Acipenser gueldenstaedtii
escape food_bait 7 Pastinaca sativa subsp sativa, Thladiantha dubia , Persea americana , Cucurbita maxima Duchesne Duchesne ex Poir, Ballerus ballerus
escape horticulture 287 Prunus domestica subsp syriaca Borkh Janch ex Mansf, Vallisneria americana , Cosmos sulphureus , Thalia dealbata , Rheum rhabarbarum
escape ornamental 3 Acipenser baerii , Acipenser gueldenstaedtii , Acipenser ruthenus
escape pet 20 Orthriophis taeniurus , Procambarus clarkii , Triturus marmoratus , Pachytriton labiatus , Sciurus carolinensis
escape research 1 Massylaea vermiculata
escape zoo 1 Callosciurus erythraeus
natural dispersal 9 Akebia quinata , Neogobius melanostomus , Eichhornia crassipes , Nyctereutes procyonoides , Dreissena bugensis
release 8 Akebia quinata , Ondatra zibethicus , Eichhornia crassipes , Procyon lotor , Myocastor coypus
release biological_control 2 Rhyzobius forestieri , Harmonia axyridis
release hunting 1 Muntiacus reevesi
release landscape_improvement 2 Triturus marmoratus , Pleurodeles waltl
release other 5 Trachemys scripta troostii , Graptemys pseudogeographica kohnii , Graptemys pseudogeographica pseudogeographica, Pachytriton labiatus , Trachemys scripta scripta
stowaway 8 Proterorhinus semilunaris , Rattus norvegicus , Neogobius melanostomus , Dreissena bugensis , Chondrilla juncea
stowaway ballast_water 18 Ponticola kessleri , Gobiosoma bosc , Sinelobus vanhaareni , Neogobius melanostomus , Rangia cuneata
stowaway container 11 Phidippus , Callobius nomeus , Micropholcus fauroti , Crossopriza lyoni , Plexippus paykulli
stowaway hull_fouling 2 Hypania invalida , Sinelobus vanhaareni
stowaway organic_packing 1 Anoplophora glabripennis
stowaway other 5 Aedes koreicus , Anacridium aegyptium , Aedes albopictus , Girardia tigrina , Acheta domesticus
stowaway people_luggage 6 Parentucellia latifolia L Caruel, Trifolium suffocatum , Paronychia argentea , Poa infirma , Trifolium nigrescens
stowaway ship 1 Massylaea vermiculata
stowaway vehicles 3 Eumodicogryllus bordigalensis , Meconema meridionale , Cernuella aginnica
unaided 2 Vespa velutina , Hygromia cinctella
unknown 112 Artemisia princeps , Sagina japonica Sw ex Steud Ohwi, Hemigrapsus sanguineus , Boccardia proboscidea , Olios argelasius

enkel level 1

pathway_level1 n examples
contaminant 91 Artemisia sieversiana ,Sisymbrium runcinatum ,Caenoplana bicolor ,Bolboschoenus glaucus Lam SGSm,Hygromia cinctella
corridor 18 Dreissena bugensis ,Dendrocoelum romanodanubiale ,Neogobius fluviatilis ,Ponticola kessleri ,Echinogammarus trichiatus
escape 334 Acmella oleracea L RKJansen,Campanula lactiflora ,Eutrochium purpureum L EELamont,Phlox paniculata ,Ondatra zibethicus
natural 9 Ondatra zibethicus ,Eichhornia crassipes ,Akebia quinata ,Dreissena bugensis ,Proterorhinus semilunaris
release 18 Procyon lotor ,Trachemys scripta troostii ,Trachemys scripta scripta,Graptemys pseudogeographica pseudogeographica,Graptemys pseudogeographica kohnii
stowaway 55 Trifolium suffocatum ,Gobiosoma bosc ,Potamothrix vejdovskyi ,Neogobius melanostomus ,Grammostola rosea
unaided 2 Hygromia cinctella ,Vespa velutina
unknown 112 Mnemiopsis leidyi ,Juncus xiphioides ,Euryopis episinoides ,Artemisia princeps ,Ziziphus lotus

Aantal soorten op signaal lijst

Door problemen met soorten die nog niet de juiste locality hebben (zie issue #45) is deze indicator nog niet af. Hier is echter een weergave hoe de grafiek er zal uitzien: NumberOfSpeciesOnList_NL

merk op dat de vogels allemaal ontbreken, dit is het gevolg van de ontbrekende locality zie issue #45

SanderDevisscher commented 5 years ago
casual Animalia Plantae
freshwater 11 9
freshwater&terrestrial 0 1
marine 0 0
marine&freshwater 0 0
terrestrial 0 1183
established
freshwater 70 18
freshwater&terrestrial 2 5
marine 21 0
marine&freshwater 5 0
terrestrial 38 504
extinct
freshwater 0 1
freshwater&terrestrial 0 0
marine 0 0
marine&freshwater 0 0
terrestrial 0 13
introduced
freshwater 12 0
freshwater&terrestrial 0 0
marine 0 0
marine&freshwater 0 0
terrestrial 73 0