Calculation of the nature indicators for Flanders
The repo structure is based on cookiecutter-data-science.
├── README.md : Top-level description of the project and how to run it
├── Makefile : File to rerun get-data or reports
├── LICENSE : MIT License
├── data
│ ├── processed : Tidy format, not-aggregated data; allows to run the analysis from outside the INBO
| ├── raw : Unproccesed data from different sources
| └── vocabularies : Mappings of data to standardize
│
├── reports : Generated output; no manual editing!
│ ├── html : HTML report for each indicator
│ │ ├── europese-vlinderindex-graslanden.html
│ │ ├── aantal-verkochte-visverloven.html
│ │ └── ...
│ │
│ ├── docx : Combined report for editorial
│ │ └── draft-natuurindicatoren-report.docx
│ │
│ └── figures : Figures for each indicator
│ ├── europese-vlinderindex-graslanden-1.png
│ ├── europese-vlinderindex-graslanden-2.png
│ ├── aantal-verkochte-visverloven-1.png
│ └── ...
│
├── requirements.txt : Requirements file for reproducing the analysis environment
│
|── src : All source code for this project
| ├── utils : Reusable functions, applicable for multiple reports
| | └── ...
| |
| ├── get-data : Scripts to generate processed data from raw data for each indicator
| │ ├── europese-vlinderindex-graslanden.R
| │ ├── aantal-verkochte-visverloven.R
| │ └── ...
| |
| ├── europese-vlinderindex-graslanden.Rmd
| └── aantal-verkochte-visverloven.Rmd
|
|__ information : Papers, useful documents or guidelines. Make names of papers consistentIn order to make the rendering of the .Rmd file to the proper reports/html folder, use the rmarkdwon render function instead of the knitr-button, as follows (for the vlinderindex example):
rmarkdown::render("europese-vlinderindex-graslanden.Rmd", output_file = "../reports/html/europese-vlinderindex-graslanden.html")