Microscopy Image Manager

The Microscopy Image Manger is a proof of concept solution for microscopy image management based on the EMRrest service and IObox tools.

Installation Instructions

1. Install ERMrest

   See https://github.com/informatics-isi-edu/ermrest

   Use the master branch rather than releases.

2. Install Globus Online Transfer Client API

   sudo easy_install globusonline-transfer-api-client

3. Install and setup the additional REST services

   See REST services documentation.

4. Install printer services

   cd printer && sudo python setup.py install

5. Setup the database

   See configuration guide.

6. Install the webcli

   rsync -av --delete --exclude=".*" ./webcli /var/www/html/

7. Install Zoomify Viewer

   Note: You will need a licensed verison of the Zoomify HTML5 Viewer. For more information, visit the Zoomify website.

   You will need to copy over the ZoomifyImageViewer.js and the Assets/ directory normally located in the same directory of the Zoomify distribution zip file.

   mkdir -p /var/www/html/webcli/zoomify
   cp /path/to/ZoomifyImageViewer /var/www/html/webcli/zoomify/
   cp -R /path/to/Assets /var/www/html/webcli/zoomify/

8. Restart httpd

   sudo service httpd restart

License

MIM is made available as open source under the Apache License, Version 2.0. Please see the LICENSE file for more information.