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.. image:: docs/img/pychimera.png
Use UCSF Chimera packages in any Python 2.7 interpreter
.. image:: docs/img/pychimera.gif
With PyChimera you can…
pychimera script.py
.import chimera
in interactive coding sessions outside UCSF Chimera,
including IPython and Jupyter Notebooks.conda
or virtualenv
packages with pychimera --gui
.I hope it’s useful! Feedback is appreciated!
The updated documentation is always available at readthedocs
_.
Largely based on ideas by Greg Couch at chimera-users
_.
.. _UCSF Chimera: https://www.cgl.ucsf.edu/chimera/ .. _latest UCSF Chimera: http://www.cgl.ucsf.edu/chimera/download.html .. _Greg Couch at chimera-users: http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html .. _readthedocs: http://pychimera.readthedocs.io
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PyChimera is scientific software, funded by public research grants
(Spanish MINECO's project CTQ2014-54071-P
, Generalitat de Catalunya's
project 2014SGR989
and research grant 2017FI_B2_00168
, COST Action CM1306
).
If you make use of PyChimera in scientific publications, please cite it. It will help
measure the impact of our research and secure future funding!
.. code-block:: latex
@article{pychimera2018, author = {Rodríguez-Guerra Pedregal, Jaime and Maréchal, Jean-Didier}, title = {PyChimera: use UCSF Chimera modules in any Python 2.7 project}, journal = {Bioinformatics}, volume = {34}, number = {10}, pages = {1784-1785}, year = {2018}, doi = {10.1093/bioinformatics/bty021}, URL = {http://dx.doi.org/10.1093/bioinformatics/bty021}, eprint = {/oup/backfile/content_public/journal/bioinformatics/34/10/10.1093_bioinformatics_bty021/1/bty021.pdf} }