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interactivereport
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RNASequest
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Incorrect construction of gene annotation when not provided
#34
ferg-0
closed
1 year ago
1
Make log file with output that comes to the screen
#33
ferg-0
closed
2 years ago
0
EAreport library package issue
#32
wli7
closed
1 year ago
3
Simplify the "analysis-*" meta id file
#31
ferg-0
closed
2 years ago
2
Make numerical group levels allowed
#30
ferg-0
closed
2 years ago
1
install.yml
#29
z5ouyang
closed
1 year ago
0
stringr & dplyr are required for gtf.gz_to_gene_info
#28
z5ouyang
closed
2 years ago
0
Expression Plot legend mis-match
#27
z5ouyang
closed
3 years ago
4
EApub Shinyone parameters
#26
xinmin-zhang
closed
3 years ago
7
EApub not copying data to final production folder
#25
xinmin-zhang
closed
3 years ago
0
Check "covariate_levels" refers to valid levels
#24
ferg-0
opened
3 years ago
3
Create a union of top 30 expressed genes plot with % of total reads
#23
ferg-0
closed
3 years ago
1
Project title is missing
#22
z5ouyang
closed
3 years ago
1
NA in sample meta information
#21
z5ouyang
closed
3 years ago
1
additional column in meta not included in factor
#20
z5ouyang
closed
3 years ago
1
alignQC.pdf sample ordering
#19
ferg-0
closed
3 years ago
1
Capture project path in ProjectInfo.csv file
#18
ferg-0
closed
3 years ago
1
ProteinGeneName has too many genes
#17
xinmin-zhang
closed
3 years ago
1
EADA on demo data
#16
ferg-0
closed
3 years ago
2
ProteinGeneName table in EA quickomics object output
#15
ferg-0
closed
3 years ago
1
sampleMetaFactor default ordering
#14
ferg-0
closed
3 years ago
1
Define factor ordering for character & numerical group variables
#13
ferg-0
closed
3 years ago
1
QC plot of (effective) length versus std of counts/TPM plot
#12
ferg-0
closed
3 years ago
1
make DEG analysis qsubbable
#11
ferg-0
closed
3 years ago
1
EA2DA incompatibility with custom groups
#10
ferg-0
closed
3 years ago
1
Input checking code for QuickOmics_DEG to be put into EArun to execute at start
#9
ferg-0
closed
3 years ago
1
PC covariates static plots ordering
#8
ferg-0
closed
3 years ago
1
PC covariates x-axis labels for long labels
#7
ferg-0
closed
3 years ago
1
Variable ordering for PC_Covariate analysis and wiki update
#6
ferg-0
closed
3 years ago
1
Rownames field in sample meta table and Var.2 field
#5
ferg-0
closed
3 years ago
1
Put TST number into the title for QuickOmics
#4
ferg-0
closed
3 years ago
1
Splitting compareInfo file with EAsplit
#3
ferg-0
closed
3 years ago
1
TPM adjustment for numerical variables - working correctly?
#2
ferg-0
closed
3 years ago
3
Project info csv file when project name has commas
#1
ferg-0
closed
3 years ago
1