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iontorrent / TS

Torrent Suite
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Examples of how to use TS from command line? #37

Open jpflorido opened 6 years ago

jpflorido commented 6 years ago

Hi, I have Ion Proton data (exome sequencing) and I have no idea how to analyze them. I've analyzed exome data from other platforms using the standard GATK pipeline, but I've not found documentation of how to analyze Ion Proton data (steps needed) from command line. The following document is suitable for users that have Torrent Suite from an user interface perspective: https://assets.thermofisher.com/TFS-Assets/LSG/manuals/MAN0017203_TorrentSuite5_6_Help.pdf

Any help please for command line users? Thanks, Javier

cweiming commented 6 years ago

@jpflorido,

Have you find any document for command line users?

-- WM

jpflorido commented 6 years ago

No, no clues. This is why I do not like Ion Torrent (and do not recommend it).

cweiming commented 6 years ago

It's annoying! Almost all people recommended me to use TS for iontorrent samples due to its special core technology. However, no everyone has a torrent service to run torrent data.

Help ion torrent company can release an interactive interface of TS.

-- WM