For support questions, please send them to the following support mailing list:

• ngs-amsupport@thermofisher.com (Americas)
• ngs-eusupport@thermofisher.com (EMEA)
• ngs-gcsupport@thermofisher.com (Greater China)
• ngs-sasiasupport@thermofisher.com (South Asia)
• jptech@thermofisher.com (Japan)

APAC customers, please contact your local sales representative, Field Service Engineer or Field Bioinformatics Specialist

Please see buildTools/BUILD.txt for build requirements and instructions. Note especially the section BUILD SPECIFIC MODULES.

To build Analysis module, the command is:

MODULES=Analysis ./buildTools/build.sh

Tips:

• If you are building this software for the first time, it's suggested to use a Docker container to build. That will reduce the chance of being blocked by any environment dependencies.

  https://hub.docker.com/r/iontorrent/tsbuild/

• Note that the code that was formerly in the ion-alignment and tmap packages is now rolled into the ion-analysis packages

• For standalone Torrent Variant Caller, please see the below link for instructions. There are supported Docker containers for various platform.

  http://updates.iontorrent.com/tvc_standalone/README.txt https://hub.docker.com/r/iontorrent/tvcbuild/