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iontorrent / TS

Torrent Suite
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error downloading picard-tools-1.130.tar.gz from http://updates.iontorrent.com #68

Open abenjak opened 3 years ago

abenjak commented 3 years ago

Hello,

I managed to compile TS-TorrentSuite_5.12.1.sp1 last year. However, ./buildTools/build.sh is now throwing an error:

error: downloading 'http://updates.iontorrent.com/updates/software/external/picard-tools-1.130.tar.gz' failed
status_code: 22
status_string: "HTTP response code said error"

Indeed, wget on this link fails at 95%. Also downloading with a browser shows a message that this link contains a virus (?). Could you please check what's going on with that link.

Workaround

Replace the problematic link with a GitHub link in buildTools/cmake/CMakeLists.dependencies.txt at line 341. Note that the GitHub link points to a .zip file, the other link to .tag.gz, not sure this needs to be taken care of. In my case buildTools/build.sh finished without error, but I see this in the log:

-- extracting...
     src='/TS/build/picard-1.130-prefix/src/picard-tools-1.130.zip'
     dst='/TS/build/picard-1.130'
-- extracting... [tar xfz]