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ioos / ioos_code_lab

Notebook demonstrations and examples
https://ioos.github.io/ioos_code_lab
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[New Notebook]: R example using the package voluModel in species modeling, showcasing marine life data #211

Open laurabrenskelle opened 1 month ago

laurabrenskelle commented 1 month ago

Programming Language

R

Module/Software/IOOS data service?

OBIS

Module/Software/IOOS data service?

https://hannahlowens.github.io/voluModel/articles/a_Introduction.html

Provide a description.

Using the example in the documentation for the R package voluModel as a template, this notebook will use a subset of IOOS Marine Life/MBON data to provide an example of species distribution modeling that accounts for the depth of the occurrence. Environmental variables are pulled from the World Ocean Atlas.

laurabrenskelle commented 1 month ago

voluModel GitHub

laurabrenskelle commented 1 month ago

I've started to work on this, and I think I am going to focus on yellowtail snapper Ocyurus chrysurus for the example.

ocefpaf commented 1 month ago

I'm creating the conda-forge packages for volumodel and its dependencies in https://github.com/conda-forge/staged-recipes/pull/26896. We will need them in the IOOS conda environment to run the notebook in the CIs here.

laurabrenskelle commented 1 month ago

In addition to this, it looks like some functionality is being added to rgbif to allow users to grab occurrences using a download DOI. We can showcase that in this notebook if it is ready in time. See https://github.com/gbif/portal-feedback/issues/5389#issuecomment-2232561793