Renames VCF tag DP to COV_TOTAL (which is the total reads mapped to the site by gramtools). New tags: ALLELE_DP = mean read depth of ref and each alt; DP = ALLELE_DP of the allele called by the genotyper.
New filter added on DP, where if the read depth is more than (default) 3 standard deviations from the mean depth, then it fails the filter.
Renames VCF tag
DPtoCOV_TOTAL(which is the total reads mapped to the site by gramtools). New tags:ALLELE_DP= mean read depth of ref and each alt;DP=ALLELE_DPof the allele called by the genotyper.New filter added on
DP, where if the read depth is more than (default) 3 standard deviations from the mean depth, then it fails the filter.