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iqbal-lab-org / minos

Variant call adjudication
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i don't know error #115

Open kdyoung100 opened 2 years ago

kdyoung100 commented 2 years ago

minos adjudicate --reads /data1/kdyoung/KNTA/Batch01_20211129/1_S1_L001_R1_001_filtered.fastq.gz --reads /data1/kdyoung/KNTA/Batch01_20211129/1_S1_L001_R2_001_filtered.fastq.gz /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/04.minos_vcf/ /home/kdyoung/bacteria_sample/ref/06.Mycobacterium/H37Rv/Mycobacterium.fasta /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/01.samtools/1_H37Rv.vcf /home/kdyoung/01.Variant/10.KNTA/Batch01/1/01.snp/02.delly/DELLY_1.vcf --force --sample_name sample_1

output file only log file why not final.vcf ?

martinghunt commented 2 years ago

What is in the log file? Did you get any error messages in your terminal?

kdyoung100 commented 2 years ago

in the log file commend and my terminal not messages !

image

kdyoung100 commented 2 years ago

log.txt

martinghunt commented 2 years ago

Could you please update to the latest release 0.12.4 and then check if your install works on the new test data? https://github.com/iqbal-lab-org/minos/wiki/Minos-test-data