remove cortex MISMAPPED_UNPLACEABLE VCF records

iqbal-lab-org / minos

Variant call adjudication

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remove cortex MISMAPPED_UNPLACEABLE VCF records #46

Open martinghunt opened 6 years ago

martinghunt commented 6 years ago

In rare cases, cortex has the filter column as "MISMAPPED_UNPLACEABLE". These are getting through into minos results. Filter these VCF records out right at the start of a minos run because they should not be used.

iqbal-lab commented 6 years ago

Only keep Pass cortex calls