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iqbal-lab-org / minos

Variant call adjudication
MIT License
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Try to make valid VCF file #84

Closed martinghunt closed 4 years ago

martinghunt commented 4 years ago

Try to fix issues in current VCF output by minos, according to the latest spec, which is linked here: https://samtools.github.io/hts-specs/

Known issues:

  1. GT should be first in FORMAT/INFO columns
  2. Invalid DP format in header (issue #77)
martinghunt commented 4 years ago

and remove the pointless KMER=... from the INFO column