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Plasmid analysis using rearrangement distances
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Integerisation from annotation
#1
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babayagaofficial
closed
1 year ago
babayagaofficial
commented
1 year ago
[x] hardwired to Murray dataset -- alter to read in filenames from a config file
[x] possibly rewrite geneseq class (or even remove entirely?) (used for block finding) (block finding script not entirely trustworthy imo)
[x] change workflow to output integer sequences in unimog file format
[x] decide whether or not to include deduplication
[x] add jaccard network calculation (use leandro's scripts)
[x] edit to annotate using bakta
[x] do we still need reorientation step?
[x] deduplication and block finding only per gene jaccard community
[x] deduplication
[x] output mapping of duplicates to deduplicate label