Integerisation from annotation

[babayagaofficial]

• [x] hardwired to Murray dataset -- alter to read in filenames from a config file
• [x] possibly rewrite geneseq class (or even remove entirely?) (used for block finding) (block finding script not entirely trustworthy imo)
• [x] change workflow to output integer sequences in unimog file format
• [x] decide whether or not to include deduplication
• [x] add jaccard network calculation (use leandro's scripts)
• [x] edit to annotate using bakta
• [x] do we still need reorientation step?
• [x] deduplication and block finding only per gene jaccard community
• [x] deduplication
• [x] output mapping of duplicates to deduplicate label