it seems panaroo gives any duplicated gene a label DISTINCT from the duplicates in other places in the genome
which means that when we map panaroo's genes back to the genome it comes from, any genome with duplicates will have a bunch non-existent genes surrounding a real gene where there's duplication
so basically anything we've ever is wrong
therefore need to manually check for duplicates, somehow
it seems panaroo gives any duplicated gene a label DISTINCT from the duplicates in other places in the genome
which means that when we map panaroo's genes back to the genome it comes from, any genome with duplicates will have a bunch non-existent genes surrounding a real gene where there's duplication
so basically anything we've ever is wrong
therefore need to manually check for duplicates, somehow