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iqbal-lab-org / pling

Plasmid analysis using rearrangement distances
MIT License
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Different integers assigned to genes in separate run-throughs #24

Open babayagaofficial opened 9 months ago

babayagaofficial commented 9 months ago

Rerunning the annotation method seems to each time assign different integer labels to genes. So the integerisation is correct, but label assignment is different. Don't yet know why this is happening. It prevents writing unit tests to check the unimogs the integerisation outputs, so would be good to fix at some point.

leoisl commented 9 months ago

I just deleted a previous comment, which I think was wrong. I thought the integerisation script for roundhound and pling were the same, but it might not be the case. Just let me know if I am wrong and if this script is from the roundhound source code, then I think this issue is already fixed, but the scripts are out of sync.

babayagaofficial commented 9 months ago

This is integerisation from gene annotation, so it doesn't use any scripts from roundhound

leoisl commented 9 months ago

Yeah, just got confused, sorry about that :(